Strain Fitness in Pseudomonas simiae WCS417 around PS417_03670

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03665 and PS417_03670 are separated by 0 nucleotidesPS417_03670 and PS417_03675 are separated by 3 nucleotides PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020 _03665 PS417_03670: PS417_03670 - MerR family transcriptional regulator, at 831,021 to 831,950 _03670 PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913 _03675 Position (kb) 831 832Strain fitness (log2 ratio) -2 -1 0 1 2 3at 830.167 kb on + strand, within PS417_03665at 830.351 kb on - strand, within PS417_03665at 830.351 kb on - strand, within PS417_03665at 830.351 kb on - strand, within PS417_03665at 830.351 kb on - strand, within PS417_03665at 830.353 kb on + strand, within PS417_03665at 830.551 kb on + strand, within PS417_03665at 830.587 kb on + strand, within PS417_03665at 830.608 kb on - strand, within PS417_03665at 830.772 kb on + strand, within PS417_03665at 830.772 kb on + strand, within PS417_03665at 830.822 kb on + strand, within PS417_03665at 830.822 kb on + strand, within PS417_03665at 831.022 kb on + strandat 831.105 kb on + strandat 831.132 kb on + strand, within PS417_03670at 831.217 kb on + strand, within PS417_03670at 831.218 kb on - strand, within PS417_03670at 831.218 kb on - strand, within PS417_03670at 831.408 kb on - strand, within PS417_03670at 831.416 kb on - strand, within PS417_03670at 831.749 kb on + strand, within PS417_03670at 831.756 kb on + strand, within PS417_03670at 831.756 kb on + strand, within PS417_03670at 831.756 kb on + strand, within PS417_03670at 831.756 kb on + strand, within PS417_03670at 831.757 kb on - strand, within PS417_03670at 831.757 kb on - strand, within PS417_03670at 831.933 kb on + strandat 831.955 kb on + strandat 832.018 kb on + strandat 832.018 kb on + strandat 832.333 kb on + strand, within PS417_03675at 832.333 kb on + strand, within PS417_03675at 832.333 kb on + strand, within PS417_03675at 832.334 kb on - strand, within PS417_03675at 832.340 kb on - strand, within PS417_03675at 832.513 kb on + strand, within PS417_03675at 832.514 kb on - strand, within PS417_03675at 832.514 kb on - strand, within PS417_03675at 832.559 kb on - strand, within PS417_03675at 832.652 kb on - strand, within PS417_03675at 832.913 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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830,167 + PS417_03665 0.41 +0.3
830,351 - PS417_03665 0.54 -2.4
830,351 - PS417_03665 0.54 -1.5
830,351 - PS417_03665 0.54 -0.0
830,351 - PS417_03665 0.54 -0.8
830,353 + PS417_03665 0.54 +0.1
830,551 + PS417_03665 0.67 +0.0
830,587 + PS417_03665 0.70 +3.3
830,608 - PS417_03665 0.71 +0.1
830,772 + PS417_03665 0.83 -0.0
830,772 + PS417_03665 0.83 -0.8
830,822 + PS417_03665 0.86 -0.2
830,822 + PS417_03665 0.86 -0.2
831,022 + +2.7
831,105 + -0.3
831,132 + PS417_03670 0.12 +0.2
831,217 + PS417_03670 0.21 +0.1
831,218 - PS417_03670 0.21 -0.5
831,218 - PS417_03670 0.21 +0.7
831,408 - PS417_03670 0.42 +0.1
831,416 - PS417_03670 0.42 +0.5
831,749 + PS417_03670 0.78 +2.2
831,756 + PS417_03670 0.79 -0.4
831,756 + PS417_03670 0.79 +0.2
831,756 + PS417_03670 0.79 +1.5
831,756 + PS417_03670 0.79 -0.3
831,757 - PS417_03670 0.79 -1.7
831,757 - PS417_03670 0.79 -0.1
831,933 + -0.5
831,955 + -1.9
832,018 + +0.6
832,018 + +0.6
832,333 + PS417_03675 0.39 -0.6
832,333 + PS417_03675 0.39 -0.7
832,333 + PS417_03675 0.39 +0.4
832,334 - PS417_03675 0.40 +0.2
832,340 - PS417_03675 0.40 +0.8
832,513 + PS417_03675 0.58 -1.0
832,514 - PS417_03675 0.58 -0.6
832,514 - PS417_03675 0.58 +1.6
832,559 - PS417_03675 0.63 +0.6
832,652 - PS417_03675 0.73 +0.3
832,913 + +0.2

Or see this region's nucleotide sequence