Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03655 and PS417_03660 overlap by 4 nucleotides PS417_03660 and PS417_03665 overlap by 8 nucleotides PS417_03665 and PS417_03670 are separated by 0 nucleotides PS417_03670 and PS417_03675 are separated by 3 nucleotides
PS417_03655: PS417_03655 - short-chain dehydrogenase, at 828,381 to 829,163
_03655
PS417_03660: PS417_03660 - transcriptional regulator, at 829,160 to 829,582
_03660
PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020
_03665
PS417_03670: PS417_03670 - MerR family transcriptional regulator, at 831,021 to 831,950
_03670
PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913
_03675
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 828.683 kb on - strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.815 kb on - strand, within PS417_03655 at 829.016 kb on - strand, within PS417_03655 at 829.218 kb on + strand, within PS417_03660 at 829.218 kb on + strand, within PS417_03660 at 829.219 kb on - strand, within PS417_03660 at 829.242 kb on + strand, within PS417_03660 at 829.243 kb on - strand, within PS417_03660 at 829.258 kb on - strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.438 kb on - strand, within PS417_03660 at 829.825 kb on + strand, within PS417_03665 at 829.826 kb on - strand, within PS417_03665 at 829.826 kb on - strand, within PS417_03665 at 830.167 kb on + strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.353 kb on + strand, within PS417_03665 at 830.551 kb on + strand, within PS417_03665 at 830.587 kb on + strand, within PS417_03665 at 830.608 kb on - strand, within PS417_03665 at 830.772 kb on + strand, within PS417_03665 at 830.772 kb on + strand, within PS417_03665 at 830.822 kb on + strand, within PS417_03665 at 830.822 kb on + strand, within PS417_03665 at 831.022 kb on + strand at 831.105 kb on + strand at 831.132 kb on + strand, within PS417_03670 at 831.217 kb on + strand, within PS417_03670 at 831.218 kb on - strand, within PS417_03670 at 831.218 kb on - strand, within PS417_03670 at 831.408 kb on - strand, within PS417_03670 at 831.416 kb on - strand, within PS417_03670 at 831.749 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.757 kb on - strand, within PS417_03670 at 831.757 kb on - strand, within PS417_03670 at 831.933 kb on + strand at 831.955 kb on + strand at 832.018 kb on + strand at 832.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 828,683 - PS417_03655 0.39 -2.5 828,709 + PS417_03655 0.42 -0.4 828,709 + PS417_03655 0.42 +0.3 828,709 + PS417_03655 0.42 -1.4 828,815 - PS417_03655 0.55 +0.6 829,016 - PS417_03655 0.81 -2.2 829,218 + PS417_03660 0.14 +0.1 829,218 + PS417_03660 0.14 -1.7 829,219 - PS417_03660 0.14 +0.1 829,242 + PS417_03660 0.19 -2.2 829,243 - PS417_03660 0.20 +0.4 829,258 - PS417_03660 0.23 -1.4 829,422 + PS417_03660 0.62 -0.4 829,422 + PS417_03660 0.62 +2.2 829,422 + PS417_03660 0.62 -2.0 829,438 - PS417_03660 0.66 +0.6 829,825 + PS417_03665 0.17 +0.5 829,826 - PS417_03665 0.17 -0.6 829,826 - PS417_03665 0.17 +0.4 830,167 + PS417_03665 0.41 +0.3 830,351 - PS417_03665 0.54 -2.4 830,351 - PS417_03665 0.54 -1.5 830,351 - PS417_03665 0.54 -0.0 830,351 - PS417_03665 0.54 -0.8 830,353 + PS417_03665 0.54 +0.1 830,551 + PS417_03665 0.67 +0.0 830,587 + PS417_03665 0.70 +3.3 830,608 - PS417_03665 0.71 +0.1 830,772 + PS417_03665 0.83 -0.0 830,772 + PS417_03665 0.83 -0.8 830,822 + PS417_03665 0.86 -0.2 830,822 + PS417_03665 0.86 -0.2 831,022 + +2.7 831,105 + -0.3 831,132 + PS417_03670 0.12 +0.2 831,217 + PS417_03670 0.21 +0.1 831,218 - PS417_03670 0.21 -0.5 831,218 - PS417_03670 0.21 +0.7 831,408 - PS417_03670 0.42 +0.1 831,416 - PS417_03670 0.42 +0.5 831,749 + PS417_03670 0.78 +2.2 831,756 + PS417_03670 0.79 -0.4 831,756 + PS417_03670 0.79 +0.2 831,756 + PS417_03670 0.79 +1.5 831,756 + PS417_03670 0.79 -0.3 831,757 - PS417_03670 0.79 -1.7 831,757 - PS417_03670 0.79 -0.1 831,933 + -0.5 831,955 + -1.9 832,018 + +0.6 832,018 + +0.6
Or see this region's nucleotide sequence