Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03310 and PS417_03315 overlap by 4 nucleotides PS417_03315 and PS417_03320 are separated by 143 nucleotides PS417_03320 and PS417_03325 are separated by 122 nucleotides
PS417_03310: PS417_03310 - carbonate dehydratase, at 758,238 to 758,882
_03310
PS417_03315: PS417_03315 - hypothetical protein, at 758,879 to 759,406
_03315
PS417_03320: PS417_03320 - hypothetical protein, at 759,550 to 760,719
_03320
PS417_03325: PS417_03325 - acid phosphatase, at 760,842 to 762,542
_03325
Position (kb) 759
760
761 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 758.617 kb on - strand, within PS417_03310 at 758.619 kb on + strand, within PS417_03310 at 758.781 kb on + strand, within PS417_03310 at 758.782 kb on - strand, within PS417_03310 at 758.782 kb on - strand, within PS417_03310 at 758.880 kb on + strand at 759.150 kb on + strand, within PS417_03315 at 759.208 kb on - strand, within PS417_03315 at 759.230 kb on + strand, within PS417_03315 at 759.230 kb on + strand, within PS417_03315 at 759.231 kb on - strand, within PS417_03315 at 759.231 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.379 kb on + strand at 759.380 kb on - strand at 759.406 kb on + strand at 759.406 kb on + strand at 759.407 kb on - strand at 759.420 kb on + strand at 759.421 kb on - strand at 759.452 kb on - strand at 759.509 kb on + strand at 759.678 kb on - strand, within PS417_03320 at 759.858 kb on - strand, within PS417_03320 at 759.858 kb on - strand, within PS417_03320 at 759.879 kb on - strand, within PS417_03320 at 760.076 kb on + strand, within PS417_03320 at 760.088 kb on + strand, within PS417_03320 at 760.266 kb on - strand, within PS417_03320 at 760.344 kb on + strand, within PS417_03320 at 760.344 kb on + strand, within PS417_03320 at 760.345 kb on - strand, within PS417_03320 at 760.346 kb on + strand, within PS417_03320 at 760.538 kb on + strand, within PS417_03320 at 760.719 kb on + strand at 760.719 kb on + strand at 760.806 kb on + strand at 760.987 kb on + strand at 761.249 kb on - strand, within PS417_03325 at 761.384 kb on - strand, within PS417_03325 at 761.611 kb on + strand, within PS417_03325
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 758,617 - PS417_03310 0.59 -2.6 758,619 + PS417_03310 0.59 +1.5 758,781 + PS417_03310 0.84 -0.1 758,782 - PS417_03310 0.84 +1.2 758,782 - PS417_03310 0.84 +1.6 758,880 + +0.6 759,150 + PS417_03315 0.51 +0.9 759,208 - PS417_03315 0.62 +1.5 759,230 + PS417_03315 0.66 -1.4 759,230 + PS417_03315 0.66 +1.3 759,231 - PS417_03315 0.67 +2.0 759,231 - PS417_03315 0.67 -1.4 759,291 - PS417_03315 0.78 -1.9 759,291 - PS417_03315 0.78 -0.3 759,291 - PS417_03315 0.78 -0.6 759,291 - PS417_03315 0.78 -1.8 759,379 + -0.1 759,380 - -1.0 759,406 + +0.0 759,406 + +0.4 759,407 - +0.9 759,420 + -2.2 759,421 - -1.8 759,452 - -0.3 759,509 + +0.3 759,678 - PS417_03320 0.11 +0.5 759,858 - PS417_03320 0.26 +0.2 759,858 - PS417_03320 0.26 +4.0 759,879 - PS417_03320 0.28 -0.1 760,076 + PS417_03320 0.45 -0.0 760,088 + PS417_03320 0.46 +0.3 760,266 - PS417_03320 0.61 -0.2 760,344 + PS417_03320 0.68 +0.5 760,344 + PS417_03320 0.68 +0.2 760,345 - PS417_03320 0.68 -0.6 760,346 + PS417_03320 0.68 -0.7 760,538 + PS417_03320 0.84 +0.5 760,719 + +0.8 760,719 + -1.4 760,806 + -0.1 760,987 + +0.1 761,249 - PS417_03325 0.24 -0.4 761,384 - PS417_03325 0.32 +0.1 761,611 + PS417_03325 0.45 -2.4
Or see this region's nucleotide sequence