Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03105 and PS417_03110 are separated by 19 nucleotides PS417_03110 and PS417_03115 are separated by 332 nucleotides PS417_03115 and PS417_03120 are separated by 58 nucleotides
PS417_03105: PS417_03105 - secretin, at 712,564 to 713,781
_03105
PS417_03110: PS417_03110 - pilus assembly protein CpaB, at 713,801 to 714,742
_03110
PS417_03115: PS417_03115 - pilus assembly protein, at 715,075 to 715,266
_03115
PS417_03120: PS417_03120 - histidine kinase, at 715,325 to 715,729
_03120
Position (kb) 713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 712.944 kb on - strand, within PS417_03105 at 712.944 kb on - strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.040 kb on - strand, within PS417_03105 at 713.647 kb on + strand, within PS417_03105 at 713.647 kb on + strand, within PS417_03105 at 713.648 kb on - strand, within PS417_03105 at 713.925 kb on + strand, within PS417_03110 at 714.066 kb on - strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.289 kb on - strand, within PS417_03110 at 714.445 kb on + strand, within PS417_03110 at 714.535 kb on + strand, within PS417_03110 at 714.665 kb on + strand at 714.796 kb on - strand at 714.824 kb on + strand at 714.846 kb on + strand at 714.846 kb on + strand at 714.948 kb on + strand at 714.959 kb on + strand at 714.970 kb on + strand at 715.029 kb on + strand at 715.029 kb on + strand at 715.029 kb on + strand at 715.033 kb on - strand at 715.033 kb on - strand at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.103 kb on - strand, within PS417_03115 at 715.131 kb on + strand, within PS417_03115 at 715.132 kb on - strand, within PS417_03115 at 715.278 kb on + strand at 715.278 kb on + strand at 715.278 kb on + strand at 715.279 kb on - strand at 715.279 kb on - strand at 715.279 kb on - strand at 715.511 kb on - strand, within PS417_03120 at 715.511 kb on - strand, within PS417_03120 at 715.511 kb on - strand, within PS417_03120 at 715.624 kb on + strand, within PS417_03120 at 715.625 kb on - strand, within PS417_03120 at 715.667 kb on + strand, within PS417_03120 at 715.667 kb on + strand, within PS417_03120
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 712,944 - PS417_03105 0.31 -0.9 712,944 - PS417_03105 0.31 +0.7 713,039 + PS417_03105 0.39 +0.6 713,039 + PS417_03105 0.39 -0.7 713,040 - PS417_03105 0.39 +0.1 713,647 + PS417_03105 0.89 +0.1 713,647 + PS417_03105 0.89 +1.4 713,648 - PS417_03105 0.89 -0.0 713,925 + PS417_03110 0.13 +1.7 714,066 - PS417_03110 0.28 -1.8 714,278 + PS417_03110 0.51 -0.5 714,278 + PS417_03110 0.51 +0.4 714,278 + PS417_03110 0.51 -2.4 714,278 + PS417_03110 0.51 +0.5 714,278 + PS417_03110 0.51 -0.3 714,278 + PS417_03110 0.51 -1.1 714,278 + PS417_03110 0.51 -0.1 714,278 + PS417_03110 0.51 -2.2 714,279 - PS417_03110 0.51 -2.2 714,279 - PS417_03110 0.51 -0.5 714,279 - PS417_03110 0.51 +1.5 714,279 - PS417_03110 0.51 -1.3 714,279 - PS417_03110 0.51 -0.2 714,289 - PS417_03110 0.52 -0.9 714,445 + PS417_03110 0.68 +0.2 714,535 + PS417_03110 0.78 +1.7 714,665 + -0.0 714,796 - +0.0 714,824 + -1.2 714,846 + +0.7 714,846 + +0.0 714,948 + +0.7 714,959 + +1.1 714,970 + -1.5 715,029 + +0.8 715,029 + -0.3 715,029 + -0.4 715,033 - +0.5 715,033 - -0.5 715,102 + PS417_03115 0.14 +0.7 715,102 + PS417_03115 0.14 -1.1 715,102 + PS417_03115 0.14 +1.3 715,102 + PS417_03115 0.14 +0.3 715,102 + PS417_03115 0.14 +0.0 715,103 - PS417_03115 0.15 +0.3 715,131 + PS417_03115 0.29 -3.3 715,132 - PS417_03115 0.30 -0.3 715,278 + +0.0 715,278 + -1.4 715,278 + -1.7 715,279 - +0.3 715,279 - -0.2 715,279 - -0.2 715,511 - PS417_03120 0.46 -0.1 715,511 - PS417_03120 0.46 +0.7 715,511 - PS417_03120 0.46 -0.4 715,624 + PS417_03120 0.74 +2.0 715,625 - PS417_03120 0.74 +1.0 715,667 + PS417_03120 0.84 -1.5 715,667 + PS417_03120 0.84 -0.2
Or see this region's nucleotide sequence