Strain Fitness in Pseudomonas simiae WCS417 around PS417_02835

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02830 and PS417_02835 are separated by 166 nucleotidesPS417_02835 and PS417_02840 are separated by 320 nucleotides PS417_02830: PS417_02830 - urea ABC transporter permease, at 640,393 to 641,895 _02830 PS417_02835: PS417_02835 - branched-chain amino acid ABC transporter substrate-binding protein, at 642,062 to 643,327 _02835 PS417_02840: PS417_02840 - hypothetical protein, at 643,648 to 649,542 _02840 Position (kb) 642 643 644Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 641.143 kb on - strand, within PS417_02830at 641.143 kb on - strand, within PS417_02830at 641.144 kb on + strand, within PS417_02830at 641.144 kb on + strand, within PS417_02830at 641.145 kb on - strand, within PS417_02830at 641.145 kb on - strand, within PS417_02830at 641.145 kb on - strand, within PS417_02830at 641.641 kb on + strand, within PS417_02830at 641.641 kb on + strand, within PS417_02830at 641.641 kb on + strand, within PS417_02830at 641.642 kb on - strand, within PS417_02830at 641.642 kb on - strand, within PS417_02830at 641.966 kb on - strandat 642.112 kb on - strandat 642.112 kb on - strandat 642.337 kb on + strand, within PS417_02835at 642.337 kb on + strand, within PS417_02835at 642.337 kb on + strand, within PS417_02835at 642.337 kb on + strand, within PS417_02835at 642.338 kb on - strand, within PS417_02835at 642.338 kb on - strand, within PS417_02835at 642.338 kb on - strand, within PS417_02835at 642.338 kb on - strand, within PS417_02835at 642.347 kb on + strand, within PS417_02835at 642.347 kb on + strand, within PS417_02835at 642.347 kb on + strand, within PS417_02835at 642.347 kb on + strand, within PS417_02835at 642.348 kb on - strand, within PS417_02835at 642.348 kb on - strand, within PS417_02835at 642.351 kb on + strand, within PS417_02835at 642.351 kb on + strand, within PS417_02835at 642.351 kb on + strand, within PS417_02835at 642.351 kb on + strand, within PS417_02835at 642.352 kb on - strand, within PS417_02835at 642.352 kb on - strand, within PS417_02835at 642.352 kb on - strand, within PS417_02835at 642.417 kb on + strand, within PS417_02835at 642.474 kb on + strand, within PS417_02835at 642.474 kb on + strand, within PS417_02835at 642.475 kb on - strand, within PS417_02835at 642.717 kb on + strand, within PS417_02835at 642.718 kb on - strand, within PS417_02835at 642.718 kb on - strand, within PS417_02835at 642.802 kb on - strand, within PS417_02835at 642.858 kb on + strand, within PS417_02835at 642.859 kb on - strand, within PS417_02835at 642.903 kb on + strand, within PS417_02835at 642.903 kb on + strand, within PS417_02835at 642.903 kb on + strand, within PS417_02835at 642.936 kb on + strand, within PS417_02835at 642.948 kb on + strand, within PS417_02835at 643.541 kb on + strandat 643.541 kb on + strandat 643.541 kb on + strandat 643.545 kb on + strandat 643.545 kb on + strandat 643.575 kb on + strandat 643.576 kb on - strandat 643.757 kb on + strandat 643.757 kb on + strandat 643.757 kb on + strandat 643.757 kb on + strandat 643.757 kb on + strandat 643.758 kb on - strandat 643.792 kb on + strandat 643.793 kb on - strandat 643.831 kb on + strandat 643.832 kb on - strandat 643.832 kb on - strandat 643.832 kb on - strandat 643.886 kb on + strandat 643.922 kb on + strandat 643.922 kb on + strandat 644.021 kb on + strandat 644.021 kb on + strandat 644.098 kb on + strandat 644.207 kb on - strandat 644.207 kb on - strandat 644.236 kb on + strandat 644.236 kb on + strandat 644.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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641,143 - PS417_02830 0.50 -0.4
641,143 - PS417_02830 0.50 -0.0
641,144 + PS417_02830 0.50 -0.3
641,144 + PS417_02830 0.50 +2.1
641,145 - PS417_02830 0.50 +1.1
641,145 - PS417_02830 0.50 +0.1
641,145 - PS417_02830 0.50 -0.6
641,641 + PS417_02830 0.83 -0.7
641,641 + PS417_02830 0.83 -1.6
641,641 + PS417_02830 0.83 -0.4
641,642 - PS417_02830 0.83 +0.8
641,642 - PS417_02830 0.83 -0.5
641,966 - +1.0
642,112 - +0.7
642,112 - -0.4
642,337 + PS417_02835 0.22 +3.4
642,337 + PS417_02835 0.22 -0.9
642,337 + PS417_02835 0.22 -1.7
642,337 + PS417_02835 0.22 -0.2
642,338 - PS417_02835 0.22 -0.9
642,338 - PS417_02835 0.22 +0.7
642,338 - PS417_02835 0.22 +0.1
642,338 - PS417_02835 0.22 -0.7
642,347 + PS417_02835 0.23 -0.7
642,347 + PS417_02835 0.23 -0.3
642,347 + PS417_02835 0.23 -0.7
642,347 + PS417_02835 0.23 -0.6
642,348 - PS417_02835 0.23 +0.1
642,348 - PS417_02835 0.23 +1.3
642,351 + PS417_02835 0.23 -0.6
642,351 + PS417_02835 0.23 -1.7
642,351 + PS417_02835 0.23 -0.9
642,351 + PS417_02835 0.23 -0.7
642,352 - PS417_02835 0.23 -0.6
642,352 - PS417_02835 0.23 -0.2
642,352 - PS417_02835 0.23 -1.4
642,417 + PS417_02835 0.28 -0.7
642,474 + PS417_02835 0.33 +0.1
642,474 + PS417_02835 0.33 -0.3
642,475 - PS417_02835 0.33 -0.3
642,717 + PS417_02835 0.52 -0.4
642,718 - PS417_02835 0.52 -1.5
642,718 - PS417_02835 0.52 +0.3
642,802 - PS417_02835 0.58 -1.7
642,858 + PS417_02835 0.63 -0.9
642,859 - PS417_02835 0.63 -0.4
642,903 + PS417_02835 0.66 +0.1
642,903 + PS417_02835 0.66 -0.2
642,903 + PS417_02835 0.66 -0.2
642,936 + PS417_02835 0.69 -0.3
642,948 + PS417_02835 0.70 +0.4
643,541 + -1.0
643,541 + +0.0
643,541 + -1.3
643,545 + +0.5
643,545 + +0.7
643,575 + +1.1
643,576 - -1.1
643,757 + -0.2
643,757 + -1.7
643,757 + +0.1
643,757 + -1.3
643,757 + -0.8
643,758 - -0.6
643,792 + +0.9
643,793 - -0.1
643,831 + -1.4
643,832 - -0.3
643,832 - -0.9
643,832 - -0.6
643,886 + -1.4
643,922 + -1.9
643,922 + -3.3
644,021 + +0.3
644,021 + -0.1
644,098 + -1.1
644,207 - +1.3
644,207 - +0.4
644,236 + -0.0
644,236 + -0.2
644,237 - +0.0

Or see this region's nucleotide sequence