Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26750 and PS417_26755 overlap by 4 nucleotides PS417_26755 and PS417_26760 overlap by 4 nucleotides PS417_26760 and PS417_26765 are separated by 19 nucleotides PS417_26765 and PS417_26770 are separated by 144 nucleotides
PS417_26750: PS417_26750 - homoserine acetyltransferase, at 5,779,946 to 5,780,380
_26750
PS417_26755: PS417_26755 - nucleoside-triphosphate diphosphatase, at 5,780,377 to 5,780,973
_26755
PS417_26760: PS417_26760 - oxidase, at 5,780,970 to 5,782,172
_26760
PS417_26765: PS417_26765 - membrane protein, at 5,782,192 to 5,782,515
_26765
PS417_26770: PS417_26770 - tRNA (guanine-N7)-methyltransferase, at 5,782,660 to 5,783,385
_26770
Position (kb) 5780
5781
5782
5783 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5780.012 kb on - strand, within PS417_26750 at 5780.013 kb on + strand, within PS417_26750 at 5780.013 kb on + strand, within PS417_26750 at 5780.014 kb on - strand, within PS417_26750 at 5780.057 kb on + strand, within PS417_26750 at 5780.058 kb on - strand, within PS417_26750 at 5780.115 kb on + strand, within PS417_26750 at 5780.308 kb on + strand, within PS417_26750 at 5780.388 kb on + strand at 5780.400 kb on - strand at 5780.632 kb on + strand, within PS417_26755 at 5780.845 kb on + strand, within PS417_26755 at 5781.061 kb on - strand at 5781.147 kb on + strand, within PS417_26760 at 5781.147 kb on + strand, within PS417_26760 at 5781.148 kb on - strand, within PS417_26760 at 5781.148 kb on - strand, within PS417_26760 at 5781.738 kb on + strand, within PS417_26760 at 5781.845 kb on + strand, within PS417_26760 at 5781.900 kb on + strand, within PS417_26760 at 5782.088 kb on - strand at 5782.088 kb on - strand at 5782.180 kb on + strand at 5782.405 kb on + strand, within PS417_26765 at 5782.446 kb on + strand, within PS417_26765 at 5782.446 kb on + strand, within PS417_26765 at 5782.446 kb on + strand, within PS417_26765 at 5782.450 kb on + strand, within PS417_26765 at 5782.565 kb on - strand at 5782.565 kb on - strand at 5782.820 kb on + strand, within PS417_26770 at 5783.027 kb on + strand, within PS417_26770 at 5783.028 kb on - strand, within PS417_26770
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,780,012 - PS417_26750 0.15 -0.3 5,780,013 + PS417_26750 0.15 +0.1 5,780,013 + PS417_26750 0.15 -0.8 5,780,014 - PS417_26750 0.16 +0.2 5,780,057 + PS417_26750 0.26 -0.1 5,780,058 - PS417_26750 0.26 -0.8 5,780,115 + PS417_26750 0.39 -0.9 5,780,308 + PS417_26750 0.83 -0.6 5,780,388 + -2.1 5,780,400 - -1.2 5,780,632 + PS417_26755 0.43 -3.9 5,780,845 + PS417_26755 0.78 -0.0 5,781,061 - -0.6 5,781,147 + PS417_26760 0.15 -1.1 5,781,147 + PS417_26760 0.15 -0.3 5,781,148 - PS417_26760 0.15 -1.3 5,781,148 - PS417_26760 0.15 -1.5 5,781,738 + PS417_26760 0.64 -1.3 5,781,845 + PS417_26760 0.73 -1.8 5,781,900 + PS417_26760 0.77 -1.4 5,782,088 - -0.4 5,782,088 - -1.4 5,782,180 + +0.1 5,782,405 + PS417_26765 0.66 -0.4 5,782,446 + PS417_26765 0.78 -0.4 5,782,446 + PS417_26765 0.78 +1.5 5,782,446 + PS417_26765 0.78 +2.7 5,782,450 + PS417_26765 0.80 -0.2 5,782,565 - -0.2 5,782,565 - +0.3 5,782,820 + PS417_26770 0.22 +1.0 5,783,027 + PS417_26770 0.51 +0.2 5,783,028 - PS417_26770 0.51 -0.7
Or see this region's nucleotide sequence