Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02515 and PS417_02520 are separated by 139 nucleotides PS417_02520 and PS417_02525 are separated by 93 nucleotides
PS417_02515: PS417_02515 - adenylosuccinate synthetase, at 574,731 to 576,020
_02515
PS417_02520: PS417_02520 - chemotaxis protein, at 576,160 to 578,094
_02520
PS417_02525: PS417_02525 - iron ABC transporter permease, at 578,188 to 579,753
_02525
Position (kb) 576
577
578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 576.022 kb on - strand at 576.022 kb on - strand at 576.034 kb on + strand at 576.182 kb on + strand at 576.183 kb on - strand at 576.218 kb on + strand at 576.218 kb on + strand at 576.218 kb on + strand at 576.219 kb on - strand at 576.219 kb on - strand at 576.219 kb on - strand at 576.222 kb on + strand at 576.605 kb on + strand, within PS417_02520 at 576.605 kb on + strand, within PS417_02520 at 576.606 kb on - strand, within PS417_02520 at 576.610 kb on + strand, within PS417_02520 at 576.611 kb on - strand, within PS417_02520 at 577.239 kb on + strand, within PS417_02520 at 577.240 kb on - strand, within PS417_02520 at 577.529 kb on + strand, within PS417_02520 at 577.530 kb on - strand, within PS417_02520 at 577.758 kb on + strand, within PS417_02520 at 577.758 kb on + strand, within PS417_02520 at 577.842 kb on - strand, within PS417_02520 at 578.092 kb on + strand at 578.093 kb on - strand at 578.222 kb on + strand at 578.261 kb on + strand at 578.262 kb on - strand at 578.383 kb on + strand, within PS417_02525 at 578.384 kb on - strand, within PS417_02525 at 578.384 kb on - strand, within PS417_02525 at 578.555 kb on + strand at 578.556 kb on - strand, within PS417_02525 at 578.586 kb on - strand, within PS417_02525 at 578.586 kb on - strand, within PS417_02525 at 578.601 kb on - strand, within PS417_02525 at 578.601 kb on - strand, within PS417_02525 at 578.601 kb on - strand, within PS417_02525 at 578.615 kb on + strand, within PS417_02525 at 578.831 kb on - strand, within PS417_02525 at 578.831 kb on - strand, within PS417_02525 at 578.831 kb on - strand, within PS417_02525 at 578.897 kb on + strand, within PS417_02525 at 578.897 kb on + strand, within PS417_02525 at 578.897 kb on + strand, within PS417_02525 at 579.010 kb on + strand, within PS417_02525 at 579.010 kb on + strand, within PS417_02525 at 579.093 kb on - strand, within PS417_02525 at 579.093 kb on - strand, within PS417_02525
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 576,022 - -0.9 576,022 - -0.1 576,034 + -1.1 576,182 + -0.8 576,183 - -0.9 576,218 + +0.2 576,218 + +3.3 576,218 + +0.7 576,219 - -1.7 576,219 - -1.3 576,219 - +0.4 576,222 + -0.3 576,605 + PS417_02520 0.23 -0.8 576,605 + PS417_02520 0.23 -0.0 576,606 - PS417_02520 0.23 -1.4 576,610 + PS417_02520 0.23 -3.3 576,611 - PS417_02520 0.23 -0.6 577,239 + PS417_02520 0.56 -0.8 577,240 - PS417_02520 0.56 +0.2 577,529 + PS417_02520 0.71 -0.8 577,530 - PS417_02520 0.71 -0.2 577,758 + PS417_02520 0.83 +0.6 577,758 + PS417_02520 0.83 -0.7 577,842 - PS417_02520 0.87 -0.3 578,092 + -0.5 578,093 - +0.1 578,222 + +0.3 578,261 + +0.3 578,262 - -0.4 578,383 + PS417_02525 0.12 +0.1 578,384 - PS417_02525 0.13 +0.7 578,384 - PS417_02525 0.13 +0.4 578,555 + +0.7 578,556 - PS417_02525 0.23 +0.2 578,586 - PS417_02525 0.25 +1.1 578,586 - PS417_02525 0.25 -0.8 578,601 - PS417_02525 0.26 +0.4 578,601 - PS417_02525 0.26 -0.7 578,601 - PS417_02525 0.26 +0.4 578,615 + PS417_02525 0.27 +0.1 578,831 - PS417_02525 0.41 -0.5 578,831 - PS417_02525 0.41 -0.0 578,831 - PS417_02525 0.41 -0.8 578,897 + PS417_02525 0.45 +0.6 578,897 + PS417_02525 0.45 -1.3 578,897 + PS417_02525 0.45 +2.3 579,010 + PS417_02525 0.52 -2.3 579,010 + PS417_02525 0.52 -1.5 579,093 - PS417_02525 0.58 -0.1 579,093 - PS417_02525 0.58 -1.4
Or see this region's nucleotide sequence