Strain Fitness in Pseudomonas simiae WCS417 around PS417_24855

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
5,389,670	+		PS417_24850	0.36	-0.8
5,389,671	-		PS417_24850	0.36	+1.1
5,389,735	+		PS417_24850	0.44	-0.9
5,389,735	+		PS417_24850	0.44	+0.5
5,389,735	+		PS417_24850	0.44	+1.6
5,389,735	+		PS417_24850	0.44	-1.5
5,389,735	+		PS417_24850	0.44	-0.4
5,389,735	+		PS417_24850	0.44	-0.9
5,389,736	-		PS417_24850	0.44	-0.5
5,389,736	-		PS417_24850	0.44	-0.3
5,389,736	-		PS417_24850	0.44	+1.3
5,389,814	+		PS417_24850	0.54	-0.6
5,389,815	-		PS417_24850	0.55	-0.7
5,389,815	-		PS417_24850	0.55	+0.9
5,389,815	-				+0.9
5,389,943	+		PS417_24850	0.71	+0.3
5,389,943	+		PS417_24850	0.71	-0.5
5,389,944	-		PS417_24850	0.71	-0.3
5,389,944	-		PS417_24850	0.71	-0.1
5,389,944	-		PS417_24850	0.71	+0.5
5,389,944	-		PS417_24850	0.71	-0.5
5,389,950	-		PS417_24850	0.72	-1.9
5,390,012	+		PS417_24850	0.80	+1.3
5,390,013	-		PS417_24850	0.80	+0.3
5,390,013	-		PS417_24850	0.80	-0.3
5,390,021	+		PS417_24850	0.81	+0.3
5,390,022	-		PS417_24850	0.81	-1.7
5,390,022	-		PS417_24850	0.81	-0.1
5,390,121	+				+1.3
5,390,121	+				-1.5
5,390,122	-				-0.2
5,390,122	-				+0.0
5,390,122	-				-0.6
5,390,174	+				-1.1
5,390,209	-				-0.7
5,390,219	+				-0.5
5,390,219	+				-0.2
5,390,267	+				-0.8
5,390,267	+				+0.4
5,390,267	+				+0.4
5,390,268	-				+3.6
5,390,268	-				-0.7
5,390,268	-				-0.5
5,390,371	-				-0.3
5,390,414	-				-0.1
5,390,414	-				+0.3
5,390,414	-				+1.2
5,390,418	+				-0.4
5,390,419	-				-0.5
5,390,419	-				-0.7
5,390,419	-				-0.9
5,390,419	-				+1.0
5,390,419	-				-1.0
5,390,419	-				-0.8
5,390,422	+				-2.2
5,390,543	+				+1.0
5,390,544	-				-0.6
5,390,589	+				+0.4
5,390,589	+				-0.4
5,390,589	+				+0.2
5,390,589	+				-0.1
5,390,589	+				-1.1
5,390,590	-				+0.5
5,390,590	-				+0.5
5,390,590	-				+0.5
5,390,590	-				-1.6
5,390,590	-				-0.0
5,390,791	+		PS417_24855	0.21	-0.2
5,390,791	+		PS417_24855	0.21	+0.4
5,390,791	+		PS417_24855	0.21	-0.3
5,390,791	+				+0.3
5,390,792	-		PS417_24855	0.21	-0.1
5,390,792	-		PS417_24855	0.21	-0.6
5,390,792	-		PS417_24855	0.21	-1.5
5,390,825	-		PS417_24855	0.24	+1.6
5,390,825	-		PS417_24855	0.24	+1.0
5,390,910	-		PS417_24855	0.31	-1.9
5,390,937	+		PS417_24855	0.33	+1.4
5,390,937	+		PS417_24855	0.33	-0.6
5,390,937	+		PS417_24855	0.33	+1.5
5,390,937	+		PS417_24855	0.33	-1.5
5,390,938	-		PS417_24855	0.33	+0.2
5,390,953	+		PS417_24855	0.34	+1.0
5,390,954	-		PS417_24855	0.34	+0.4
5,390,982	-		PS417_24855	0.37	+0.4
5,391,012	-		PS417_24855	0.39	+0.2
5,391,021	-		PS417_24855	0.40	-1.5
5,391,046	+		PS417_24855	0.42	+1.1
5,391,046	+		PS417_24855	0.42	+1.9
5,391,046	+		PS417_24855	0.42	+0.7
5,391,047	-		PS417_24855	0.42	+0.8
5,391,047	-		PS417_24855	0.42	+0.7
5,391,047	-		PS417_24855	0.42	-1.6
5,391,080	+		PS417_24855	0.45	+0.5
5,391,094	+		PS417_24855	0.46	-0.1
5,391,094	+		PS417_24855	0.46	+0.7
5,391,095	-		PS417_24855	0.46	-0.8
5,391,134	-		PS417_24855	0.49	-0.7
5,391,299	+		PS417_24855	0.63	-0.9
5,391,299	+		PS417_24855	0.63	+0.8
5,391,335	-		PS417_24855	0.66	-0.6
5,391,461	-		PS417_24855	0.76	+1.4
5,391,526	+		PS417_24855	0.81	-0.5
5,391,526	+		PS417_24855	0.81	-0.9
5,391,527	-		PS417_24855	0.81	-0.9
5,391,527	-		PS417_24855	0.81	-0.1
5,391,527	-		PS417_24855	0.81	-1.1
5,391,542	+		PS417_24855	0.83	-1.5
5,391,590	+		PS417_24855	0.87	+1.7
5,391,591	-		PS417_24855	0.87	+0.7
5,391,591	-				+1.3
5,391,591	-		PS417_24855	0.87	+0.2
5,391,610	+		PS417_24855	0.88	+0.2
5,391,610	+		PS417_24855	0.88	-0.5
5,391,610	+		PS417_24855	0.88	-0.2
5,391,611	-		PS417_24855	0.88	+1.1
5,391,726	-				-1.7
5,391,733	+				-0.1
5,391,928	+				-1.7
5,391,953	+		PS417_24860	0.12	-0.3
5,391,959	+		PS417_24860	0.13	+1.0
5,392,019	+		PS417_24860	0.22	+0.8
5,392,106	-		PS417_24860	0.34	-1.3
5,392,136	-		PS417_24860	0.38	-2.2
5,392,228	-		PS417_24860	0.51	-3.7
5,392,415	-		PS417_24860	0.77	+0.2
5,392,418	+		PS417_24860	0.77	+0.0
5,392,419	-		PS417_24860	0.77	-0.3
5,392,608	-				+3.5
5,392,625	+				+0.3
5,392,625	+				+0.3
5,392,626	-				+1.6
5,392,645	+				-0.2
5,392,671	+				-0.9
5,392,699	-				+0.5