Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20245 and PS417_20250 overlap by 4 nucleotides PS417_20250 and PS417_20255 are separated by 50 nucleotides PS417_20255 and PS417_20260 are separated by 10 nucleotides
PS417_20245: PS417_20245 - copper resistance protein CopD, at 4,397,143 to 4,397,997
_20245
PS417_20250: PS417_20250 - copper resistance protein CopC, at 4,397,994 to 4,398,380
_20250
PS417_20255: PS417_20255 - copper resistance protein CopB, at 4,398,431 to 4,399,246
_20255
PS417_20260: PS417_20260 - copper oxidase, at 4,399,257 to 4,400,963
_20260
Position (kb) 4398
4399
4400 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4397.591 kb on - strand, within PS417_20245 at 4397.591 kb on - strand, within PS417_20245 at 4397.912 kb on + strand at 4397.912 kb on + strand at 4397.913 kb on - strand at 4397.913 kb on - strand at 4398.070 kb on + strand, within PS417_20250 at 4398.116 kb on + strand, within PS417_20250 at 4398.116 kb on + strand, within PS417_20250 at 4398.117 kb on - strand, within PS417_20250 at 4398.117 kb on - strand, within PS417_20250 at 4398.369 kb on - strand at 4398.369 kb on - strand at 4398.498 kb on + strand at 4398.544 kb on - strand, within PS417_20255 at 4398.564 kb on - strand, within PS417_20255 at 4398.746 kb on + strand, within PS417_20255 at 4398.771 kb on + strand, within PS417_20255 at 4398.948 kb on - strand, within PS417_20255 at 4399.092 kb on + strand, within PS417_20255 at 4399.092 kb on + strand, within PS417_20255 at 4399.093 kb on - strand, within PS417_20255 at 4399.093 kb on - strand, within PS417_20255 at 4399.303 kb on + strand at 4399.304 kb on - strand at 4399.578 kb on - strand, within PS417_20260 at 4399.657 kb on + strand, within PS417_20260 at 4399.945 kb on + strand, within PS417_20260 at 4399.981 kb on + strand, within PS417_20260 at 4400.007 kb on + strand, within PS417_20260 at 4400.007 kb on + strand, within PS417_20260 at 4400.007 kb on + strand, within PS417_20260 at 4400.008 kb on - strand, within PS417_20260 at 4400.008 kb on - strand, within PS417_20260 at 4400.122 kb on + strand, within PS417_20260 at 4400.213 kb on + strand, within PS417_20260 at 4400.221 kb on + strand, within PS417_20260 at 4400.221 kb on + strand, within PS417_20260 at 4400.221 kb on + strand, within PS417_20260 at 4400.227 kb on + strand, within PS417_20260 at 4400.227 kb on + strand, within PS417_20260 at 4400.227 kb on + strand, within PS417_20260 at 4400.228 kb on - strand, within PS417_20260 at 4400.228 kb on - strand, within PS417_20260
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 4,397,591 - PS417_20245 0.52 -1.6 4,397,591 - PS417_20245 0.52 -0.7 4,397,912 + +0.2 4,397,912 + -0.6 4,397,913 - +0.3 4,397,913 - -2.6 4,398,070 + PS417_20250 0.20 -0.3 4,398,116 + PS417_20250 0.32 +0.3 4,398,116 + PS417_20250 0.32 +0.5 4,398,117 - PS417_20250 0.32 -0.8 4,398,117 - PS417_20250 0.32 -1.4 4,398,369 - -1.4 4,398,369 - +0.5 4,398,498 + +0.5 4,398,544 - PS417_20255 0.14 -0.0 4,398,564 - PS417_20255 0.16 +0.5 4,398,746 + PS417_20255 0.39 +0.6 4,398,771 + PS417_20255 0.42 +0.3 4,398,948 - PS417_20255 0.63 +1.3 4,399,092 + PS417_20255 0.81 -1.0 4,399,092 + PS417_20255 0.81 +1.7 4,399,093 - PS417_20255 0.81 -1.4 4,399,093 - PS417_20255 0.81 +1.6 4,399,303 + +0.3 4,399,304 - -1.0 4,399,578 - PS417_20260 0.19 -0.4 4,399,657 + PS417_20260 0.23 +0.2 4,399,945 + PS417_20260 0.40 +0.4 4,399,981 + PS417_20260 0.42 +0.0 4,400,007 + PS417_20260 0.44 -0.4 4,400,007 + PS417_20260 0.44 +0.2 4,400,007 + PS417_20260 0.44 -0.6 4,400,008 - PS417_20260 0.44 +0.1 4,400,008 - PS417_20260 0.44 +0.1 4,400,122 + PS417_20260 0.51 -3.0 4,400,213 + PS417_20260 0.56 +0.0 4,400,221 + PS417_20260 0.56 +0.3 4,400,221 + PS417_20260 0.56 -0.3 4,400,221 + PS417_20260 0.56 -0.1 4,400,227 + PS417_20260 0.57 +3.4 4,400,227 + PS417_20260 0.57 -1.1 4,400,227 + PS417_20260 0.57 +1.0 4,400,228 - PS417_20260 0.57 -0.2 4,400,228 - PS417_20260 0.57 -1.0
Or see this region's nucleotide sequence