Strain Fitness in Pseudomonas simiae WCS417 around PS417_18035

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
3,929,547	-				-1.3
3,929,623	+				+0.5
3,929,623	+				+0.0
3,929,643	-				+1.4
3,929,710	-				-0.2
3,929,722	-				+3.2
3,929,728	+				-0.4
3,929,857	-		PS417_18025	0.24	+3.4
3,929,858	+		PS417_18025	0.24	-3.0
3,929,859	-		PS417_18025	0.25	-1.2
3,929,859	-		PS417_18025	0.25	-1.1
3,930,007	+		PS417_18025	0.64	+0.2
3,930,008	-		PS417_18025	0.64	-0.2
3,930,008	-				-0.6
3,930,059	-		PS417_18025	0.78	+0.8
3,930,059	-		PS417_18025	0.78	+2.1
3,930,111	+				+0.2
3,930,302	+				-0.6
3,930,306	+				+3.0
3,930,306	+				-1.3
3,930,306	+				-1.5
3,930,307	-				-0.1
3,930,307	-				-1.3
3,930,307	-				+1.4
3,930,307	-				-0.2
3,930,307	-				+1.3
3,930,307	-				+0.7
3,930,307	-				+0.1
3,930,312	+				-1.0
3,930,312	+				-0.6
3,930,312	+				-1.3
3,930,313	-				+0.4
3,930,394	+				+0.2
3,930,394	+				-0.1
3,930,401	-				-0.6
3,930,483	+				-1.2
3,930,622	+		PS417_18035	0.15	+0.7
3,930,623	-		PS417_18035	0.15	+1.5
3,930,666	+		PS417_18035	0.17	+3.5
3,930,666	+		PS417_18035	0.17	+0.1
3,930,666	+		PS417_18035	0.17	+1.2
3,930,666	+		PS417_18035	0.17	-0.3
3,930,667	-		PS417_18035	0.17	-1.1
3,930,726	+		PS417_18035	0.20	+0.5
3,930,726	+		PS417_18035	0.20	-0.2
3,930,922	-		PS417_18035	0.29	-0.3
3,931,383	+		PS417_18035	0.51	-0.3
3,931,398	+		PS417_18035	0.51	+1.3
3,931,443	+		PS417_18035	0.54	+0.9
3,931,443	+				+1.7
3,931,444	-		PS417_18035	0.54	+0.2
3,931,444	-		PS417_18035	0.54	-1.9
3,931,444	-		PS417_18035	0.54	-0.0
3,931,720	-		PS417_18035	0.67	+1.0
3,931,720	-		PS417_18035	0.67	+0.6
3,931,843	-		PS417_18035	0.73	+0.1
3,931,947	+		PS417_18035	0.77	+3.7
3,932,083	-		PS417_18035	0.84	+0.3
3,932,454	+				-0.1
3,932,894	-		PS417_18040	0.90	+0.5
3,933,382	+		PS417_18045	0.73	+1.3