Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01530 and PS417_01535 are separated by 141 nucleotides PS417_01535 and PS417_01540 are separated by 103 nucleotides PS417_01540 and PS417_01545 overlap by 4 nucleotides PS417_01545 and PS417_01550 overlap by 4 nucleotides
PS417_01530: PS417_01530 - hypothetical protein, at 339,518 to 340,075
_01530
PS417_01535: PS417_01535 - tRNA-Phe, at 340,217 to 340,292
_01535
PS417_01540: PS417_01540 - iron transporter, at 340,396 to 340,668
_01540
PS417_01545: PS417_01545 - adenine glycosylase, at 340,665 to 341,732
_01545
PS417_01550: PS417_01550 - cell envelope biogenesis protein AsmA, at 341,729 to 343,939
_01550
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 339.680 kb on + strand, within PS417_01530 at 339.681 kb on - strand, within PS417_01530 at 339.845 kb on - strand, within PS417_01530 at 339.892 kb on + strand, within PS417_01530 at 339.920 kb on + strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.932 kb on + strand, within PS417_01530 at 339.932 kb on + strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 340.018 kb on - strand, within PS417_01530 at 340.035 kb on + strand at 340.036 kb on - strand at 340.213 kb on - strand at 340.370 kb on - strand at 340.760 kb on + strand at 340.760 kb on + strand at 340.762 kb on + strand at 340.763 kb on - strand at 340.763 kb on - strand at 340.763 kb on - strand at 341.485 kb on + strand, within PS417_01545 at 341.485 kb on + strand, within PS417_01545 at 341.486 kb on - strand, within PS417_01545 at 341.486 kb on - strand, within PS417_01545 at 341.514 kb on + strand, within PS417_01545 at 341.514 kb on + strand, within PS417_01545 at 341.581 kb on + strand, within PS417_01545 at 341.582 kb on - strand, within PS417_01545 at 341.693 kb on - strand at 341.986 kb on + strand, within PS417_01550 at 342.225 kb on - strand, within PS417_01550 at 342.225 kb on - strand, within PS417_01550 at 342.462 kb on + strand, within PS417_01550 at 342.462 kb on + strand, within PS417_01550 at 342.463 kb on - strand, within PS417_01550
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 339,680 + PS417_01530 0.29 -0.7 339,681 - PS417_01530 0.29 +0.6 339,845 - PS417_01530 0.59 +0.7 339,892 + PS417_01530 0.67 -0.6 339,920 + PS417_01530 0.72 +0.5 339,930 - PS417_01530 0.74 +1.1 339,930 - PS417_01530 0.74 +0.3 339,930 - PS417_01530 0.74 -0.0 339,932 + PS417_01530 0.74 +0.1 339,932 + PS417_01530 0.74 -0.2 339,933 - PS417_01530 0.74 -2.4 339,933 - PS417_01530 0.74 -0.3 339,933 - PS417_01530 0.74 +0.4 340,018 - PS417_01530 0.90 +1.1 340,035 + -0.6 340,036 - -0.1 340,213 - -0.6 340,370 - +0.8 340,760 + -1.5 340,760 + -0.2 340,762 + +1.4 340,763 - +3.6 340,763 - -1.0 340,763 - -0.1 341,485 + PS417_01545 0.77 +0.5 341,485 + PS417_01545 0.77 +0.4 341,486 - PS417_01545 0.77 +0.3 341,486 - PS417_01545 0.77 -0.6 341,514 + PS417_01545 0.79 +1.1 341,514 + PS417_01545 0.79 +0.2 341,581 + PS417_01545 0.86 +2.6 341,582 - PS417_01545 0.86 +1.3 341,693 - -0.6 341,986 + PS417_01550 0.12 +1.1 342,225 - PS417_01550 0.22 +2.3 342,225 - PS417_01550 0.22 +0.5 342,462 + PS417_01550 0.33 +1.5 342,462 + PS417_01550 0.33 -0.1 342,463 - PS417_01550 0.33 +2.2
Or see this region's nucleotide sequence