Strain Fitness in Pseudomonas simiae WCS417 around PS417_15225

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
3,337,472	+		PS417_15220	0.54	+1.6
3,337,472	+		PS417_15220	0.54	+0.6
3,337,473	-		PS417_15220	0.54	-0.7
3,337,473	-		PS417_15220	0.54	+0.7
3,337,473	-		PS417_15220	0.54	-0.1
3,337,598	+		PS417_15220	0.64	+1.2
3,337,632	+		PS417_15220	0.67	+0.5
3,337,632	+		PS417_15220	0.67	+0.2
3,337,633	-		PS417_15220	0.67	+0.6
3,337,633	-				-0.3
3,337,633	-		PS417_15220	0.67	-0.4
3,337,647	-		PS417_15220	0.68	+0.5
3,337,647	-		PS417_15220	0.68	-0.6
3,337,647	-		PS417_15220	0.68	+0.5
3,337,809	-		PS417_15220	0.81	+0.1
3,337,909	+		PS417_15220	0.89	+0.5
3,337,909	+		PS417_15220	0.89	+0.0
3,337,909	+		PS417_15220	0.89	+0.1
3,337,910	-		PS417_15220	0.89	+0.1
3,337,966	+				-0.4
3,337,966	+				-0.9
3,337,967	-				+1.1
3,337,967	-				-1.0
3,338,130	-				-1.1
3,338,161	+				+0.5
3,338,161	+				+0.1
3,338,663	+		PS417_15225	0.34	-0.9
3,338,663	+				-0.9
3,338,664	-		PS417_15225	0.34	-1.3
3,338,969	-		PS417_15225	0.67	-0.7
3,339,109	+				+2.7
3,339,109	+		PS417_15225	0.82	-0.7
3,339,110	-		PS417_15225	0.82	-2.7
3,339,128	+		PS417_15225	0.84	-0.7
3,339,128	+		PS417_15225	0.84	-1.1
3,339,129	-		PS417_15225	0.84	-1.6
3,339,129	-		PS417_15225	0.84	-0.4
3,339,200	+				+0.4
3,339,283	-				-0.5
3,339,283	-				+0.8
3,339,316	+				-2.0
3,339,348	+				-0.4
3,339,349	-				+1.4
3,339,349	-				+0.8
3,339,484	+				-1.0
3,339,485	-				-0.8
3,339,485	-				-1.7
3,339,501	+				-0.7
3,339,507	-				-1.5
3,339,561	-				-0.3
3,339,616	-				+0.1
3,339,616	-				-2.5
3,339,898	+		PS417_15230	0.18	+0.1
3,339,914	-		PS417_15230	0.19	+1.0