Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00905 and PS417_00910 are separated by 2 nucleotides PS417_00910 and PS417_00915 are separated by 188 nucleotides
PS417_00905: PS417_00905 - histidine kinase, at 202,271 to 203,479
_00905
PS417_00910: PS417_00910 - diguanylate cyclase, at 203,482 to 204,483
_00910
PS417_00915: PS417_00915 - aminotransferase, at 204,672 to 205,856
_00915
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 202.679 kb on + strand, within PS417_00905 at 202.679 kb on + strand, within PS417_00905 at 202.940 kb on - strand, within PS417_00905 at 203.117 kb on + strand, within PS417_00905 at 203.228 kb on + strand, within PS417_00905 at 203.229 kb on - strand, within PS417_00905 at 203.246 kb on + strand, within PS417_00905 at 203.246 kb on + strand, within PS417_00905 at 203.247 kb on - strand, within PS417_00905 at 203.352 kb on + strand, within PS417_00905 at 203.525 kb on + strand at 203.526 kb on - strand at 203.526 kb on - strand at 203.630 kb on + strand, within PS417_00910 at 203.631 kb on - strand, within PS417_00910 at 203.787 kb on + strand, within PS417_00910 at 204.071 kb on + strand, within PS417_00910 at 204.071 kb on + strand, within PS417_00910 at 204.072 kb on - strand, within PS417_00910 at 204.072 kb on - strand, within PS417_00910 at 204.072 kb on - strand, within PS417_00910 at 204.179 kb on + strand, within PS417_00910 at 204.180 kb on - strand, within PS417_00910 at 204.266 kb on + strand, within PS417_00910 at 204.281 kb on + strand, within PS417_00910 at 204.281 kb on + strand, within PS417_00910 at 204.282 kb on - strand, within PS417_00910 at 204.282 kb on - strand, within PS417_00910 at 204.282 kb on - strand, within PS417_00910 at 204.531 kb on - strand at 204.573 kb on + strand at 204.597 kb on - strand at 204.640 kb on + strand at 204.697 kb on + strand at 204.786 kb on - strand at 205.395 kb on - strand, within PS417_00915 at 205.468 kb on + strand, within PS417_00915
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 202,679 + PS417_00905 0.34 -0.6 202,679 + PS417_00905 0.34 -0.9 202,940 - PS417_00905 0.55 -0.3 203,117 + PS417_00905 0.70 +0.7 203,228 + PS417_00905 0.79 +0.5 203,229 - PS417_00905 0.79 +1.5 203,246 + PS417_00905 0.81 -0.7 203,246 + PS417_00905 0.81 -0.5 203,247 - PS417_00905 0.81 +0.0 203,352 + PS417_00905 0.89 +2.0 203,525 + -0.3 203,526 - +0.5 203,526 - -1.1 203,630 + PS417_00910 0.15 -0.6 203,631 - PS417_00910 0.15 +0.1 203,787 + PS417_00910 0.30 -0.9 204,071 + PS417_00910 0.59 -0.4 204,071 + PS417_00910 0.59 -0.6 204,072 - PS417_00910 0.59 -1.7 204,072 - PS417_00910 0.59 +0.4 204,072 - PS417_00910 0.59 -0.9 204,179 + PS417_00910 0.70 -2.2 204,180 - PS417_00910 0.70 -0.2 204,266 + PS417_00910 0.78 +0.0 204,281 + PS417_00910 0.80 -0.1 204,281 + PS417_00910 0.80 -1.4 204,282 - PS417_00910 0.80 -0.4 204,282 - PS417_00910 0.80 -0.8 204,282 - PS417_00910 0.80 -0.5 204,531 - -0.1 204,573 + -1.4 204,597 - +3.1 204,640 + -1.4 204,697 + -0.1 204,786 - +3.1 205,395 - PS417_00915 0.61 -0.1 205,468 + PS417_00915 0.67 +0.8
Or see this region's nucleotide sequence