Strain Fitness in Pseudomonas simiae WCS417 around PS417_00605

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00595 and PS417_00600 are separated by 45 nucleotidesPS417_00600 and PS417_00605 are separated by 18 nucleotidesPS417_00605 and PS417_00610 overlap by 4 nucleotidesPS417_00610 and PS417_00615 overlap by 4 nucleotides PS417_00595: PS417_00595 - chemotaxis protein, at 119,360 to 121,240 _00595 PS417_00600: PS417_00600 - polyketide cyclase, at 121,286 to 121,744 _00600 PS417_00605: PS417_00605 - peptide transporter, at 121,763 to 125,140 _00605 PS417_00610: PS417_00610 - aminobenzoate oxygenase, at 125,137 to 126,084 _00610 PS417_00615: PS417_00615 - hypothetical protein, at 126,081 to 126,839 _00615 Position (kb) 121 122 123 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 121.470 kb on + strand, within PS417_00600at 121.471 kb on - strand, within PS417_00600at 121.471 kb on - strand, within PS417_00600at 121.471 kb on - strand, within PS417_00600at 121.538 kb on - strand, within PS417_00600at 121.538 kb on - strand, within PS417_00600at 121.594 kb on + strandat 121.595 kb on - strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.644 kb on - strand, within PS417_00600at 121.644 kb on - strand, within PS417_00600at 121.644 kb on - strand, within PS417_00600at 121.691 kb on + strand, within PS417_00600at 121.723 kb on + strandat 121.744 kb on + strandat 121.744 kb on + strandat 121.745 kb on - strandat 121.788 kb on + strandat 121.967 kb on + strandat 121.968 kb on - strandat 122.038 kb on - strandat 122.281 kb on + strand, within PS417_00605at 122.364 kb on + strand, within PS417_00605at 122.364 kb on + strand, within PS417_00605at 122.364 kb on + strand, within PS417_00605at 122.365 kb on - strand, within PS417_00605at 122.365 kb on - strand, within PS417_00605at 122.397 kb on - strand, within PS417_00605at 122.404 kb on - strand, within PS417_00605at 122.404 kb on - strand, within PS417_00605at 122.404 kb on - strand, within PS417_00605at 122.486 kb on + strand, within PS417_00605at 122.486 kb on + strand, within PS417_00605at 122.487 kb on - strand, within PS417_00605at 122.540 kb on + strand, within PS417_00605at 122.540 kb on + strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.563 kb on + strand, within PS417_00605at 122.563 kb on + strand, within PS417_00605at 122.564 kb on - strand, within PS417_00605at 122.564 kb on - strand, within PS417_00605at 122.567 kb on + strand, within PS417_00605at 122.567 kb on + strand, within PS417_00605at 122.601 kb on + strand, within PS417_00605at 122.602 kb on - strand, within PS417_00605at 122.757 kb on - strand, within PS417_00605at 122.757 kb on - strand, within PS417_00605at 122.757 kb on - strand, within PS417_00605at 122.764 kb on + strand, within PS417_00605at 122.764 kb on + strand, within PS417_00605at 122.805 kb on - strand, within PS417_00605at 122.872 kb on + strand, within PS417_00605at 122.872 kb on + strand, within PS417_00605at 122.873 kb on - strand, within PS417_00605at 122.874 kb on + strand, within PS417_00605at 122.874 kb on + strand, within PS417_00605at 122.874 kb on + strand, within PS417_00605at 122.874 kb on + strand, within PS417_00605at 122.874 kb on + strand, within PS417_00605at 122.874 kb on + strand, within PS417_00605at 122.875 kb on - strand, within PS417_00605at 122.875 kb on - strand, within PS417_00605at 122.875 kb on - strand, within PS417_00605at 122.875 kb on - strand, within PS417_00605at 122.875 kb on - strand, within PS417_00605at 122.876 kb on + strand, within PS417_00605at 122.876 kb on + strand, within PS417_00605at 122.877 kb on - strand, within PS417_00605at 122.877 kb on - strand, within PS417_00605at 122.877 kb on - strand, within PS417_00605at 122.921 kb on - strand, within PS417_00605at 122.959 kb on + strand, within PS417_00605at 122.959 kb on + strand, within PS417_00605at 123.641 kb on - strand, within PS417_00605at 123.642 kb on + strandat 123.642 kb on + strand, within PS417_00605at 123.642 kb on + strand, within PS417_00605at 123.642 kb on + strandat 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.643 kb on - strand, within PS417_00605at 123.795 kb on + strand, within PS417_00605at 124.196 kb on - strand, within PS417_00605at 124.337 kb on + strand, within PS417_00605at 124.337 kb on + strand, within PS417_00605at 124.338 kb on - strand, within PS417_00605at 124.338 kb on - strand, within PS417_00605at 124.338 kb on - strand, within PS417_00605at 124.407 kb on + strand, within PS417_00605at 124.408 kb on - strand, within PS417_00605at 124.408 kb on - strand, within PS417_00605at 124.438 kb on + strand, within PS417_00605at 124.439 kb on - strand, within PS417_00605at 124.446 kb on + strand, within PS417_00605at 124.447 kb on - strand, within PS417_00605at 124.560 kb on + strand, within PS417_00605at 124.561 kb on - strand, within PS417_00605at 124.561 kb on - strand, within PS417_00605at 124.561 kb on - strand, within PS417_00605at 124.581 kb on - strand, within PS417_00605at 124.610 kb on - strand, within PS417_00605at 124.610 kb on - strand, within PS417_00605at 124.610 kb on - strand, within PS417_00605at 124.610 kb on - strand, within PS417_00605at 124.659 kb on - strand, within PS417_00605at 124.768 kb on - strand, within PS417_00605at 124.768 kb on - strand, within PS417_00605at 124.768 kb on - strand, within PS417_00605at 125.059 kb on + strandat 125.059 kb on + strandat 125.067 kb on + strandat 125.165 kb on + strandat 125.165 kb on + strandat 125.166 kb on - strandat 125.262 kb on + strand, within PS417_00610at 125.306 kb on - strand, within PS417_00610at 125.444 kb on + strand, within PS417_00610at 125.617 kb on + strand, within PS417_00610at 125.617 kb on + strand, within PS417_00610at 125.618 kb on - strand, within PS417_00610at 125.695 kb on + strand, within PS417_00610at 125.695 kb on + strand, within PS417_00610at 125.695 kb on + strand, within PS417_00610at 125.750 kb on + strand, within PS417_00610at 125.891 kb on + strand, within PS417_00610at 125.908 kb on + strand, within PS417_00610at 125.908 kb on + strand, within PS417_00610at 125.981 kb on + strand, within PS417_00610at 125.982 kb on - strand, within PS417_00610at 126.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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121,470 + PS417_00600 0.40 +0.1
121,471 - PS417_00600 0.40 +4.1
121,471 - PS417_00600 0.40 -0.4
121,471 - PS417_00600 0.40 -2.4
121,538 - PS417_00600 0.55 +1.4
121,538 - PS417_00600 0.55 +1.2
121,594 + +1.8
121,595 - PS417_00600 0.67 +0.5
121,643 + PS417_00600 0.78 +2.0
121,643 + PS417_00600 0.78 -0.9
121,643 + PS417_00600 0.78 -0.8
121,643 + PS417_00600 0.78 +0.0
121,643 + PS417_00600 0.78 +0.4
121,644 - PS417_00600 0.78 -0.7
121,644 - PS417_00600 0.78 -0.0
121,644 - PS417_00600 0.78 +0.1
121,691 + PS417_00600 0.88 +1.7
121,723 + -1.7
121,744 + -0.4
121,744 + +3.5
121,745 - -1.2
121,788 + +1.1
121,967 + -1.8
121,968 - -0.2
122,038 - +0.0
122,281 + PS417_00605 0.15 +0.9
122,364 + PS417_00605 0.18 -0.4
122,364 + PS417_00605 0.18 +1.1
122,364 + PS417_00605 0.18 +0.6
122,365 - PS417_00605 0.18 -0.6
122,365 - PS417_00605 0.18 -0.4
122,397 - PS417_00605 0.19 -0.2
122,404 - PS417_00605 0.19 +1.3
122,404 - PS417_00605 0.19 -0.3
122,404 - PS417_00605 0.19 +0.8
122,486 + PS417_00605 0.21 -0.2
122,486 + PS417_00605 0.21 +0.8
122,487 - PS417_00605 0.21 -0.5
122,540 + PS417_00605 0.23 -0.4
122,540 + PS417_00605 0.23 +1.0
122,541 - PS417_00605 0.23 -0.5
122,541 - PS417_00605 0.23 -0.4
122,541 - PS417_00605 0.23 -1.9
122,541 - PS417_00605 0.23 +0.5
122,541 - PS417_00605 0.23 +0.2
122,541 - PS417_00605 0.23 -0.8
122,563 + PS417_00605 0.24 +0.5
122,563 + PS417_00605 0.24 +0.4
122,564 - PS417_00605 0.24 -0.2
122,564 - PS417_00605 0.24 +0.3
122,567 + PS417_00605 0.24 -0.2
122,567 + PS417_00605 0.24 -0.4
122,601 + PS417_00605 0.25 -0.2
122,602 - PS417_00605 0.25 -3.4
122,757 - PS417_00605 0.29 +0.8
122,757 - PS417_00605 0.29 -1.0
122,757 - PS417_00605 0.29 -2.1
122,764 + PS417_00605 0.30 -0.2
122,764 + PS417_00605 0.30 +0.4
122,805 - PS417_00605 0.31 +0.2
122,872 + PS417_00605 0.33 +1.5
122,872 + PS417_00605 0.33 -1.7
122,873 - PS417_00605 0.33 -0.1
122,874 + PS417_00605 0.33 -1.8
122,874 + PS417_00605 0.33 -0.0
122,874 + PS417_00605 0.33 -0.4
122,874 + PS417_00605 0.33 +0.1
122,874 + PS417_00605 0.33 +0.5
122,874 + PS417_00605 0.33 +0.1
122,875 - PS417_00605 0.33 +0.9
122,875 - PS417_00605 0.33 +1.3
122,875 - PS417_00605 0.33 -0.6
122,875 - PS417_00605 0.33 +0.7
122,875 - PS417_00605 0.33 +0.1
122,876 + PS417_00605 0.33 +0.9
122,876 + PS417_00605 0.33 +0.1
122,877 - PS417_00605 0.33 -0.4
122,877 - PS417_00605 0.33 -1.4
122,877 - PS417_00605 0.33 -0.0
122,921 - PS417_00605 0.34 +0.0
122,959 + PS417_00605 0.35 +1.1
122,959 + PS417_00605 0.35 +0.6
123,641 - PS417_00605 0.56 +0.8
123,642 + -0.8
123,642 + PS417_00605 0.56 +0.2
123,642 + PS417_00605 0.56 -0.7
123,642 + +3.8
123,643 - PS417_00605 0.56 +0.3
123,643 - PS417_00605 0.56 -1.3
123,643 - PS417_00605 0.56 -0.1
123,643 - PS417_00605 0.56 +2.7
123,643 - PS417_00605 0.56 -1.8
123,643 - PS417_00605 0.56 +0.8
123,643 - PS417_00605 0.56 -0.3
123,643 - PS417_00605 0.56 -1.3
123,643 - PS417_00605 0.56 +1.1
123,643 - PS417_00605 0.56 +0.0
123,643 - PS417_00605 0.56 -3.4
123,643 - PS417_00605 0.56 +0.7
123,643 - PS417_00605 0.56 +0.5
123,643 - PS417_00605 0.56 +0.4
123,795 + PS417_00605 0.60 +0.1
124,196 - PS417_00605 0.72 -1.2
124,337 + PS417_00605 0.76 +0.4
124,337 + PS417_00605 0.76 +0.1
124,338 - PS417_00605 0.76 -1.7
124,338 - PS417_00605 0.76 -0.0
124,338 - PS417_00605 0.76 +0.1
124,407 + PS417_00605 0.78 +2.0
124,408 - PS417_00605 0.78 +0.2
124,408 - PS417_00605 0.78 -0.5
124,438 + PS417_00605 0.79 -1.0
124,439 - PS417_00605 0.79 +0.2
124,446 + PS417_00605 0.79 +0.1
124,447 - PS417_00605 0.79 +1.4
124,560 + PS417_00605 0.83 -1.8
124,561 - PS417_00605 0.83 -0.2
124,561 - PS417_00605 0.83 +1.0
124,561 - PS417_00605 0.83 +0.3
124,581 - PS417_00605 0.83 +0.2
124,610 - PS417_00605 0.84 -1.0
124,610 - PS417_00605 0.84 +0.4
124,610 - PS417_00605 0.84 +4.6
124,610 - PS417_00605 0.84 +0.2
124,659 - PS417_00605 0.86 +0.1
124,768 - PS417_00605 0.89 +0.6
124,768 - PS417_00605 0.89 +0.7
124,768 - PS417_00605 0.89 +0.5
125,059 + +0.1
125,059 + +0.7
125,067 + +1.1
125,165 + -0.0
125,165 + +0.1
125,166 - -1.4
125,262 + PS417_00610 0.13 +0.6
125,306 - PS417_00610 0.18 +0.4
125,444 + PS417_00610 0.32 -0.5
125,617 + PS417_00610 0.51 +0.6
125,617 + PS417_00610 0.51 +0.6
125,618 - PS417_00610 0.51 +0.2
125,695 + PS417_00610 0.59 -0.0
125,695 + PS417_00610 0.59 +2.1
125,695 + PS417_00610 0.59 -0.5
125,750 + PS417_00610 0.65 +1.8
125,891 + PS417_00610 0.80 +0.3
125,908 + PS417_00610 0.81 +0.9
125,908 + PS417_00610 0.81 +1.9
125,981 + PS417_00610 0.89 +0.2
125,982 - PS417_00610 0.89 -1.0
126,068 + +1.0

Or see this region's nucleotide sequence