Strain Fitness in Pseudomonas simiae WCS417 around PS417_06015

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,336,459	-				+0.1
1,336,459	-				+0.1
1,336,459	-				-1.7
1,336,520	+				+0.1
1,336,520	+				+1.2
1,336,521	-				-0.5
1,336,760	+		PS417_06010	0.31	+0.3
1,336,760	+		PS417_06010	0.31	-0.1
1,336,880	+		PS417_06010	0.48	+0.2
1,336,946	+		PS417_06010	0.57	+1.0
1,336,946	+		PS417_06010	0.57	-1.5
1,336,946	+		PS417_06010	0.57	-2.1
1,336,947	-		PS417_06010	0.57	-0.1
1,337,160	-		PS417_06010	0.87	-0.6
1,337,225	+				+0.4
1,337,274	+				-0.6
1,337,274	+				-2.0
1,337,424	-				-3.4
1,337,587	+		PS417_06015	0.34	-2.7
1,337,587	+		PS417_06015	0.34	-1.1
1,337,588	-		PS417_06015	0.34	+2.3
1,337,589	+		PS417_06015	0.34	+0.2
1,337,590	-		PS417_06015	0.34	-0.3
1,337,607	+		PS417_06015	0.38	-0.8
1,337,608	-		PS417_06015	0.38	+0.4
1,337,635	+		PS417_06015	0.43	-2.6
1,337,635	+		PS417_06015	0.43	-1.3
1,337,635	+		PS417_06015	0.43	-3.0
1,337,635	+		PS417_06015	0.43	-0.2
1,337,636	-		PS417_06015	0.43	-0.6
1,337,643	+				-0.3
1,337,644	-		PS417_06015	0.44	-0.5
1,337,671	+		PS417_06015	0.49	-0.2
1,337,758	+		PS417_06015	0.65	-0.5
1,337,759	-		PS417_06015	0.65	+0.0
1,337,910	-				+0.8
1,337,947	+				+0.2
1,337,947	+				+0.2
1,337,948	-				+0.4
1,337,955	-				-0.8
1,338,127	+		PS417_06020	0.12	-0.5
1,338,128	-		PS417_06020	0.12	-2.0
1,338,131	-		PS417_06020	0.13	+0.5
1,338,331	+				-0.6
1,338,403	+		PS417_06020	0.34	+0.0
1,338,404	-		PS417_06020	0.34	+0.3
1,338,404	-		PS417_06020	0.34	+0.2
1,338,525	+		PS417_06020	0.43	-0.6
1,338,526	-		PS417_06020	0.43	-1.0
1,338,526	-		PS417_06020	0.43	-0.7
1,338,581	-		PS417_06020	0.48	+0.3