Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03505 and PS417_03510 are separated by 0 nucleotides PS417_03510 and PS417_03515 are separated by 11 nucleotides PS417_03515 and PS417_03520 overlap by 4 nucleotides PS417_03520 and PS417_03525 are separated by 14 nucleotides PS417_03525 and PS417_03530 are separated by 1 nucleotides PS417_03530 and PS417_03535 are separated by 74 nucleotides
PS417_03505: PS417_03505 - type III secretion system protein, at 803,013 to 804,110
_03505
PS417_03510: PS417_03510 - type III secretion system negative regulatory protein RspV, at 804,111 to 804,449
_03510
PS417_03515: PS417_03515 - type III secretion protein, at 804,461 to 804,664
_03515
PS417_03520: PS417_03520 - secretin, at 804,661 to 806,802
_03520
PS417_03525: PS417_03525 - hypothetical protein, at 806,817 to 807,209
_03525
PS417_03530: PS417_03530 - hypothetical protein, at 807,211 to 807,429
_03530
PS417_03535: PS417_03535 - type III secretion protein, at 807,504 to 808,115
_03535
Position (kb) 804
805
806
807 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 803.745 kb on + strand, within PS417_03505 at 803.842 kb on - strand, within PS417_03505 at 803.855 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 804.229 kb on + strand, within PS417_03510 at 804.230 kb on - strand, within PS417_03510 at 804.230 kb on - strand, within PS417_03510 at 804.233 kb on + strand, within PS417_03510 at 804.233 kb on + strand, within PS417_03510 at 804.605 kb on - strand, within PS417_03515 at 804.752 kb on - strand at 804.752 kb on - strand at 804.890 kb on + strand, within PS417_03520 at 805.137 kb on - strand, within PS417_03520 at 805.416 kb on + strand, within PS417_03520 at 805.416 kb on + strand, within PS417_03520 at 805.426 kb on + strand, within PS417_03520 at 805.501 kb on + strand, within PS417_03520 at 805.527 kb on - strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.776 kb on + strand, within PS417_03520 at 805.777 kb on - strand, within PS417_03520 at 805.777 kb on - strand, within PS417_03520 at 805.880 kb on + strand, within PS417_03520 at 805.880 kb on + strand, within PS417_03520 at 805.881 kb on - strand, within PS417_03520 at 805.903 kb on + strand, within PS417_03520 at 805.903 kb on + strand, within PS417_03520 at 806.279 kb on + strand, within PS417_03520 at 806.279 kb on + strand, within PS417_03520 at 806.605 kb on + strand at 806.796 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.803 kb on - strand at 806.803 kb on - strand at 806.803 kb on - strand at 806.818 kb on + strand at 807.132 kb on + strand, within PS417_03525 at 807.162 kb on + strand, within PS417_03525 at 807.187 kb on + strand at 807.273 kb on - strand, within PS417_03530 at 807.278 kb on + strand, within PS417_03530 at 807.359 kb on + strand, within PS417_03530 at 807.360 kb on - strand, within PS417_03530 at 807.378 kb on + strand, within PS417_03530 at 807.378 kb on + strand, within PS417_03530 at 807.436 kb on - strand at 807.436 kb on - strand at 807.480 kb on - strand at 807.491 kb on + strand at 807.527 kb on + strand at 807.527 kb on + strand at 807.616 kb on - strand at 807.734 kb on + strand, within PS417_03535 at 807.735 kb on - strand, within PS417_03535 at 807.779 kb on + strand, within PS417_03535 at 807.779 kb on + strand, within PS417_03535 at 807.780 kb on - strand, within PS417_03535 at 807.782 kb on + strand, within PS417_03535
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 803,745 + PS417_03505 0.67 +2.0 803,842 - PS417_03505 0.76 +0.5 803,855 + PS417_03505 0.77 +0.2 803,956 + PS417_03505 0.86 -1.5 803,956 + PS417_03505 0.86 -2.2 803,956 + PS417_03505 0.86 -1.3 803,957 - PS417_03505 0.86 +0.7 803,957 - PS417_03505 0.86 -1.9 803,957 - PS417_03505 0.86 -1.6 803,957 - PS417_03505 0.86 +0.4 804,229 + PS417_03510 0.35 -1.0 804,230 - PS417_03510 0.35 +0.2 804,230 - PS417_03510 0.35 -2.6 804,233 + PS417_03510 0.36 -0.1 804,233 + PS417_03510 0.36 -0.1 804,605 - PS417_03515 0.71 +1.3 804,752 - -0.2 804,752 - +0.4 804,890 + PS417_03520 0.11 -0.7 805,137 - PS417_03520 0.22 -0.6 805,416 + PS417_03520 0.35 -0.3 805,416 + PS417_03520 0.35 -1.7 805,426 + PS417_03520 0.36 -0.2 805,501 + PS417_03520 0.39 +1.0 805,527 - PS417_03520 0.40 +3.6 805,547 + PS417_03520 0.41 -1.5 805,547 + PS417_03520 0.41 +0.1 805,547 + PS417_03520 0.41 -1.2 805,547 + PS417_03520 0.41 +1.1 805,547 + PS417_03520 0.41 -1.4 805,548 - PS417_03520 0.41 -0.6 805,548 - PS417_03520 0.41 +0.5 805,548 - PS417_03520 0.41 -1.0 805,548 - PS417_03520 0.41 +0.2 805,548 - PS417_03520 0.41 -0.3 805,548 - PS417_03520 0.41 -0.5 805,776 + PS417_03520 0.52 -0.4 805,777 - PS417_03520 0.52 -0.7 805,777 - PS417_03520 0.52 -1.2 805,880 + PS417_03520 0.57 +0.1 805,880 + PS417_03520 0.57 -0.5 805,881 - PS417_03520 0.57 -0.2 805,903 + PS417_03520 0.58 -0.6 805,903 + PS417_03520 0.58 -1.4 806,279 + PS417_03520 0.76 -0.4 806,279 + PS417_03520 0.76 -0.8 806,605 + -1.4 806,796 + +0.2 806,802 + -0.7 806,802 + +0.1 806,802 + +0.0 806,802 + +0.0 806,802 + +0.0 806,802 + -1.1 806,803 - +0.0 806,803 - +1.6 806,803 - -0.8 806,818 + -0.2 807,132 + PS417_03525 0.80 -0.6 807,162 + PS417_03525 0.88 -0.8 807,187 + -0.5 807,273 - PS417_03530 0.28 +0.6 807,278 + PS417_03530 0.31 +0.3 807,359 + PS417_03530 0.68 -0.9 807,360 - PS417_03530 0.68 -0.5 807,378 + PS417_03530 0.76 +0.6 807,378 + PS417_03530 0.76 +0.5 807,436 - -0.0 807,436 - -1.3 807,480 - -0.3 807,491 + +0.0 807,527 + -0.2 807,527 + +1.2 807,616 - -1.2 807,734 + PS417_03535 0.38 -0.6 807,735 - PS417_03535 0.38 +1.0 807,779 + PS417_03535 0.45 +0.2 807,779 + PS417_03535 0.45 +0.2 807,780 - PS417_03535 0.45 -0.4 807,782 + PS417_03535 0.45 -0.0
Or see this region's nucleotide sequence