Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02785 and PS417_02790 are separated by 113 nucleotides PS417_02790 and PS417_02795 overlap by 4 nucleotides PS417_02795 and PS417_02800 are separated by 5 nucleotides
PS417_02785: PS417_02785 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 633,273 to 634,973
_02785
PS417_02790: PS417_02790 - urease subunit beta, at 635,087 to 635,392
_02790
PS417_02795: PS417_02795 - acetyltransferase, at 635,389 to 635,922
_02795
PS417_02800: PS417_02800 - acetyltransferase, at 635,928 to 636,440
_02800
Position (kb) 635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 634.165 kb on + strand, within PS417_02785 at 634.166 kb on - strand, within PS417_02785 at 634.248 kb on + strand, within PS417_02785 at 634.262 kb on - strand, within PS417_02785 at 634.861 kb on + strand at 634.939 kb on + strand at 634.939 kb on + strand at 634.940 kb on - strand at 634.940 kb on - strand at 634.940 kb on - strand at 634.951 kb on + strand at 634.951 kb on + strand at 635.050 kb on + strand at 635.053 kb on + strand at 635.053 kb on + strand at 635.054 kb on - strand at 635.057 kb on + strand at 635.057 kb on + strand at 635.088 kb on + strand at 635.333 kb on - strand, within PS417_02790 at 635.377 kb on - strand at 635.417 kb on + strand at 635.418 kb on - strand at 635.485 kb on - strand, within PS417_02795 at 635.486 kb on + strand, within PS417_02795 at 635.486 kb on + strand, within PS417_02795 at 635.487 kb on - strand, within PS417_02795 at 635.501 kb on + strand, within PS417_02795 at 635.502 kb on - strand, within PS417_02795 at 635.540 kb on + strand, within PS417_02795 at 635.629 kb on + strand, within PS417_02795 at 635.629 kb on + strand, within PS417_02795 at 635.630 kb on - strand, within PS417_02795 at 636.188 kb on - strand, within PS417_02800
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 634,165 + PS417_02785 0.52 +0.9 634,166 - PS417_02785 0.52 -0.5 634,248 + PS417_02785 0.57 -1.0 634,262 - PS417_02785 0.58 +0.7 634,861 + +1.3 634,939 + -0.7 634,939 + +1.1 634,940 - -0.5 634,940 - -0.5 634,940 - +2.2 634,951 + +1.4 634,951 + +1.0 635,050 + +0.5 635,053 + -0.2 635,053 + -0.4 635,054 - -0.6 635,057 + +0.5 635,057 + -0.4 635,088 + +0.2 635,333 - PS417_02790 0.80 -1.1 635,377 - -0.1 635,417 + +0.6 635,418 - -1.7 635,485 - PS417_02795 0.18 +0.0 635,486 + PS417_02795 0.18 -3.7 635,486 + PS417_02795 0.18 +0.0 635,487 - PS417_02795 0.18 +0.7 635,501 + PS417_02795 0.21 -1.4 635,502 - PS417_02795 0.21 +0.3 635,540 + PS417_02795 0.28 -0.7 635,629 + PS417_02795 0.45 -0.5 635,629 + PS417_02795 0.45 -1.1 635,630 - PS417_02795 0.45 +0.7 636,188 - PS417_02800 0.51 -0.9
Or see this region's nucleotide sequence