Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02680 and PS417_02685 are separated by 179 nucleotides PS417_02685 and PS417_02690 overlap by 29 nucleotides
PS417_02680: PS417_02680 - hypothetical protein, at 613,838 to 614,605
_02680
PS417_02685: PS417_02685 - cation diffusion facilitator family transporter, at 614,785 to 615,690
_02685
PS417_02690: PS417_02690 - N-acylglucosamine 2-epimerase, at 615,662 to 616,780
_02690
Position (kb) 614
615
616 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 613.855 kb on + strand at 613.856 kb on - strand at 614.106 kb on + strand, within PS417_02680 at 614.267 kb on + strand, within PS417_02680 at 614.291 kb on + strand, within PS417_02680 at 614.291 kb on + strand, within PS417_02680 at 614.292 kb on - strand, within PS417_02680 at 614.439 kb on - strand, within PS417_02680 at 614.451 kb on - strand, within PS417_02680 at 614.603 kb on + strand at 614.603 kb on + strand at 614.603 kb on + strand at 614.604 kb on - strand at 614.604 kb on - strand at 614.604 kb on - strand at 614.718 kb on + strand at 614.718 kb on + strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.723 kb on + strand at 614.738 kb on - strand at 615.061 kb on + strand, within PS417_02685 at 615.061 kb on + strand, within PS417_02685 at 615.061 kb on + strand, within PS417_02685 at 615.062 kb on - strand, within PS417_02685 at 615.062 kb on - strand, within PS417_02685 at 615.134 kb on - strand, within PS417_02685 at 615.166 kb on + strand, within PS417_02685 at 615.166 kb on + strand, within PS417_02685 at 615.167 kb on - strand, within PS417_02685 at 615.175 kb on + strand, within PS417_02685 at 615.176 kb on - strand, within PS417_02685 at 615.328 kb on + strand, within PS417_02685 at 615.328 kb on + strand, within PS417_02685 at 615.329 kb on - strand, within PS417_02685 at 615.413 kb on + strand, within PS417_02685 at 615.413 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.506 kb on - strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.663 kb on + strand at 615.699 kb on + strand at 615.892 kb on + strand, within PS417_02690 at 615.893 kb on - strand, within PS417_02690 at 616.087 kb on + strand, within PS417_02690 at 616.088 kb on - strand, within PS417_02690 at 616.303 kb on - strand, within PS417_02690 at 616.480 kb on - strand, within PS417_02690 at 616.596 kb on + strand, within PS417_02690 at 616.597 kb on - strand, within PS417_02690 at 616.597 kb on - strand, within PS417_02690 at 616.671 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 613,855 + +0.0 613,856 - -0.2 614,106 + PS417_02680 0.35 +0.2 614,267 + PS417_02680 0.56 +1.2 614,291 + PS417_02680 0.59 -1.8 614,291 + PS417_02680 0.59 -0.4 614,292 - PS417_02680 0.59 +1.5 614,439 - PS417_02680 0.78 +0.3 614,451 - PS417_02680 0.80 +0.2 614,603 + -0.1 614,603 + +1.0 614,603 + -0.2 614,604 - +0.3 614,604 - +0.2 614,604 - +1.2 614,718 + -0.0 614,718 + -0.6 614,719 - +0.4 614,719 - -0.5 614,719 - -0.8 614,719 - -0.2 614,719 - +1.3 614,719 - -0.3 614,719 - +1.4 614,723 + -0.4 614,738 - +1.3 615,061 + PS417_02685 0.30 -1.6 615,061 + PS417_02685 0.30 +0.4 615,061 + PS417_02685 0.30 -0.2 615,062 - PS417_02685 0.31 -1.0 615,062 - PS417_02685 0.31 +0.8 615,134 - PS417_02685 0.39 +0.2 615,166 + PS417_02685 0.42 -1.0 615,166 + PS417_02685 0.42 +0.4 615,167 - PS417_02685 0.42 -0.2 615,175 + PS417_02685 0.43 +1.3 615,176 - PS417_02685 0.43 +0.1 615,328 + PS417_02685 0.60 -1.9 615,328 + PS417_02685 0.60 +1.8 615,329 - PS417_02685 0.60 +0.9 615,413 + PS417_02685 0.69 -1.3 615,413 + PS417_02685 0.69 -1.2 615,496 + PS417_02685 0.78 +0.4 615,496 + PS417_02685 0.78 -1.0 615,496 + PS417_02685 0.78 +1.0 615,496 + PS417_02685 0.78 -1.7 615,497 - PS417_02685 0.79 -1.7 615,497 - PS417_02685 0.79 -0.9 615,497 - PS417_02685 0.79 +1.0 615,497 - PS417_02685 0.79 +0.2 615,497 - PS417_02685 0.79 +2.0 615,506 - PS417_02685 0.80 +0.1 615,542 + PS417_02685 0.84 +0.2 615,542 + PS417_02685 0.84 +0.4 615,542 + PS417_02685 0.84 -0.6 615,543 - PS417_02685 0.84 -0.9 615,543 - PS417_02685 0.84 -0.4 615,543 - PS417_02685 0.84 +0.9 615,543 - PS417_02685 0.84 +1.1 615,543 - PS417_02685 0.84 +2.9 615,663 + -1.2 615,699 + -2.2 615,892 + PS417_02690 0.21 +0.0 615,893 - PS417_02690 0.21 -1.0 616,087 + PS417_02690 0.38 +1.7 616,088 - PS417_02690 0.38 -2.0 616,303 - PS417_02690 0.57 +0.5 616,480 - PS417_02690 0.73 +0.9 616,596 + PS417_02690 0.83 -0.4 616,597 - PS417_02690 0.84 -0.2 616,597 - PS417_02690 0.84 +0.1 616,671 + +0.7
Or see this region's nucleotide sequence