Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26250 and PS417_26255 are separated by 219 nucleotides PS417_26255 and PS417_26260 are separated by 41 nucleotides PS417_26260 and PS417_26265 are separated by 120 nucleotides PS417_26265 and PS417_26270 are separated by 31 nucleotides
PS417_26250: PS417_26250 - peptidase M19, at 5,674,854 to 5,675,831
_26250
PS417_26255: PS417_26255 - hypothetical protein, at 5,676,051 to 5,676,452
_26255
PS417_26260: PS417_26260 - hypothetical protein, at 5,676,494 to 5,676,910
_26260
PS417_26265: PS417_26265 - hypothetical protein, at 5,677,031 to 5,677,216
_26265
PS417_26270: PS417_26270 - AraC family transcriptional regulator, at 5,677,248 to 5,678,192
_26270
Position (kb) 5676
5677 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5675.131 kb on + strand, within PS417_26250 at 5675.131 kb on + strand, within PS417_26250 at 5675.132 kb on - strand, within PS417_26250 at 5675.352 kb on + strand, within PS417_26250 at 5675.353 kb on - strand, within PS417_26250 at 5675.353 kb on - strand, within PS417_26250 at 5675.474 kb on - strand, within PS417_26250 at 5675.894 kb on - strand at 5675.894 kb on - strand at 5675.894 kb on - strand at 5675.894 kb on - strand at 5676.037 kb on + strand at 5676.171 kb on + strand, within PS417_26255 at 5676.171 kb on + strand at 5676.172 kb on - strand, within PS417_26255 at 5676.206 kb on + strand, within PS417_26255 at 5676.207 kb on - strand, within PS417_26255 at 5676.207 kb on - strand, within PS417_26255 at 5676.210 kb on + strand, within PS417_26255 at 5676.210 kb on + strand, within PS417_26255 at 5676.211 kb on - strand, within PS417_26255 at 5676.211 kb on - strand, within PS417_26255 at 5676.243 kb on + strand, within PS417_26255 at 5676.243 kb on + strand, within PS417_26255 at 5676.244 kb on - strand, within PS417_26255 at 5676.450 kb on + strand at 5676.450 kb on + strand at 5676.451 kb on - strand at 5676.490 kb on - strand at 5676.490 kb on - strand at 5676.860 kb on + strand, within PS417_26260 at 5676.861 kb on - strand, within PS417_26260 at 5676.861 kb on - strand at 5676.876 kb on - strand at 5676.876 kb on - strand at 5676.908 kb on + strand at 5676.908 kb on + strand at 5676.909 kb on - strand at 5677.195 kb on + strand, within PS417_26265 at 5677.209 kb on + strand at 5677.210 kb on - strand at 5677.210 kb on - strand at 5677.217 kb on - strand at 5677.232 kb on + strand at 5677.233 kb on - strand at 5677.233 kb on - strand at 5677.236 kb on + strand at 5677.236 kb on + strand at 5677.237 kb on - strand at 5677.237 kb on - strand at 5677.346 kb on + strand, within PS417_26270 at 5677.347 kb on - strand, within PS417_26270 at 5677.347 kb on - strand, within PS417_26270 at 5677.417 kb on + strand, within PS417_26270 at 5677.417 kb on + strand, within PS417_26270
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 5,675,131 + PS417_26250 0.28 +0.2 5,675,131 + PS417_26250 0.28 +0.4 5,675,132 - PS417_26250 0.28 +2.1 5,675,352 + PS417_26250 0.51 +1.8 5,675,353 - PS417_26250 0.51 -1.0 5,675,353 - PS417_26250 0.51 +0.5 5,675,474 - PS417_26250 0.63 +0.3 5,675,894 - +0.6 5,675,894 - -0.3 5,675,894 - -3.9 5,675,894 - -1.0 5,676,037 + -0.1 5,676,171 + PS417_26255 0.30 +2.0 5,676,171 + -1.3 5,676,172 - PS417_26255 0.30 -0.8 5,676,206 + PS417_26255 0.39 -0.8 5,676,207 - PS417_26255 0.39 -0.7 5,676,207 - PS417_26255 0.39 -0.0 5,676,210 + PS417_26255 0.40 +1.9 5,676,210 + PS417_26255 0.40 -1.0 5,676,211 - PS417_26255 0.40 -2.9 5,676,211 - PS417_26255 0.40 -1.5 5,676,243 + PS417_26255 0.48 -0.5 5,676,243 + PS417_26255 0.48 -0.3 5,676,244 - PS417_26255 0.48 -2.6 5,676,450 + +0.4 5,676,450 + -2.6 5,676,451 - -0.2 5,676,490 - +0.7 5,676,490 - +0.1 5,676,860 + PS417_26260 0.88 +0.9 5,676,861 - PS417_26260 0.88 -0.3 5,676,861 - -0.0 5,676,876 - +1.4 5,676,876 - -1.3 5,676,908 + -0.8 5,676,908 + +0.5 5,676,909 - -0.9 5,677,195 + PS417_26265 0.88 +0.1 5,677,209 + +0.5 5,677,210 - +0.4 5,677,210 - -2.2 5,677,217 - +0.1 5,677,232 + -1.0 5,677,233 - +0.9 5,677,233 - -1.0 5,677,236 + +0.5 5,677,236 + +0.7 5,677,237 - -0.5 5,677,237 - +0.1 5,677,346 + PS417_26270 0.10 +0.0 5,677,347 - PS417_26270 0.10 +0.3 5,677,347 - PS417_26270 0.10 -0.0 5,677,417 + PS417_26270 0.18 -1.2 5,677,417 + PS417_26270 0.18 +4.4
Or see this region's nucleotide sequence