Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26155 and PS417_26160 are separated by 136 nucleotides PS417_26160 and PS417_26165 are separated by 75 nucleotides PS417_26165 and PS417_26170 are separated by 196 nucleotides
PS417_26155: PS417_26155 - hypothetical protein, at 5,651,792 to 5,652,364
_26155
PS417_26160: PS417_26160 - hypothetical protein, at 5,652,501 to 5,652,959
_26160
PS417_26165: PS417_26165 - aldehyde dismutase, at 5,653,035 to 5,654,234
_26165
PS417_26170: PS417_26170 - formyltetrahydrofolate deformylase, at 5,654,431 to 5,655,288
_26170
Position (kb) 5653
5654
5655 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5652.383 kb on + strand at 5652.455 kb on + strand at 5652.500 kb on + strand at 5652.501 kb on - strand at 5652.501 kb on - strand at 5652.524 kb on - strand at 5652.612 kb on + strand, within PS417_26160 at 5652.612 kb on + strand, within PS417_26160 at 5652.612 kb on + strand at 5652.613 kb on - strand at 5652.613 kb on - strand, within PS417_26160 at 5652.890 kb on + strand, within PS417_26160 at 5652.890 kb on + strand, within PS417_26160 at 5652.891 kb on - strand, within PS417_26160 at 5652.933 kb on + strand at 5652.933 kb on + strand at 5652.961 kb on - strand at 5653.055 kb on + strand at 5653.056 kb on - strand at 5653.204 kb on + strand, within PS417_26165 at 5653.205 kb on - strand, within PS417_26165 at 5653.205 kb on - strand, within PS417_26165 at 5653.663 kb on + strand, within PS417_26165 at 5653.663 kb on + strand, within PS417_26165 at 5653.664 kb on - strand, within PS417_26165 at 5653.819 kb on + strand, within PS417_26165 at 5653.820 kb on - strand, within PS417_26165 at 5653.948 kb on - strand, within PS417_26165 at 5654.184 kb on + strand at 5654.210 kb on - strand at 5654.296 kb on - strand at 5654.330 kb on + strand at 5654.331 kb on - strand at 5654.331 kb on - strand at 5654.333 kb on + strand at 5654.334 kb on - strand at 5654.334 kb on - strand at 5654.433 kb on - strand at 5654.618 kb on + strand, within PS417_26170 at 5654.618 kb on + strand, within PS417_26170 at 5654.619 kb on - strand, within PS417_26170 at 5654.619 kb on - strand, within PS417_26170 at 5654.658 kb on - strand, within PS417_26170 at 5654.658 kb on - strand, within PS417_26170 at 5654.658 kb on - strand, within PS417_26170 at 5654.769 kb on - strand, within PS417_26170 at 5654.868 kb on - strand, within PS417_26170 at 5654.868 kb on - strand, within PS417_26170 at 5654.967 kb on - strand, within PS417_26170 at 5655.027 kb on - strand, within PS417_26170 at 5655.027 kb on - strand, within PS417_26170 at 5655.184 kb on - strand, within PS417_26170 at 5655.188 kb on + strand, within PS417_26170 at 5655.188 kb on + strand, within PS417_26170 at 5655.189 kb on - strand, within PS417_26170 at 5655.189 kb on - strand, within PS417_26170 at 5655.189 kb on - strand, within PS417_26170
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 5,652,383 + -0.8 5,652,455 + +0.6 5,652,500 + -0.5 5,652,501 - -2.5 5,652,501 - -1.0 5,652,524 - -1.5 5,652,612 + PS417_26160 0.24 -1.6 5,652,612 + PS417_26160 0.24 +0.3 5,652,612 + +1.5 5,652,613 - +1.1 5,652,613 - PS417_26160 0.24 -0.6 5,652,890 + PS417_26160 0.85 +0.8 5,652,890 + PS417_26160 0.85 -1.0 5,652,891 - PS417_26160 0.85 -0.7 5,652,933 + +0.7 5,652,933 + -1.0 5,652,961 - +0.5 5,653,055 + -1.5 5,653,056 - +0.5 5,653,204 + PS417_26165 0.14 +0.4 5,653,205 - PS417_26165 0.14 -0.7 5,653,205 - PS417_26165 0.14 +1.2 5,653,663 + PS417_26165 0.52 -0.5 5,653,663 + PS417_26165 0.52 -0.8 5,653,664 - PS417_26165 0.52 -0.7 5,653,819 + PS417_26165 0.65 -1.7 5,653,820 - PS417_26165 0.65 -0.1 5,653,948 - PS417_26165 0.76 -2.1 5,654,184 + +0.2 5,654,210 - -1.8 5,654,296 - +0.5 5,654,330 + -2.0 5,654,331 - +1.5 5,654,331 - -2.5 5,654,333 + +0.5 5,654,334 - +0.5 5,654,334 - -1.5 5,654,433 - -0.5 5,654,618 + PS417_26170 0.22 +0.8 5,654,618 + PS417_26170 0.22 +0.2 5,654,619 - PS417_26170 0.22 -1.7 5,654,619 - PS417_26170 0.22 +0.3 5,654,658 - PS417_26170 0.26 -2.3 5,654,658 - PS417_26170 0.26 -0.5 5,654,658 - PS417_26170 0.26 -0.2 5,654,769 - PS417_26170 0.39 -0.5 5,654,868 - PS417_26170 0.51 -1.5 5,654,868 - PS417_26170 0.51 +0.5 5,654,967 - PS417_26170 0.62 -2.8 5,655,027 - PS417_26170 0.69 -1.9 5,655,027 - PS417_26170 0.69 -1.0 5,655,184 - PS417_26170 0.88 -0.7 5,655,188 + PS417_26170 0.88 -0.1 5,655,188 + PS417_26170 0.88 +0.6 5,655,189 - PS417_26170 0.88 +0.5 5,655,189 - PS417_26170 0.88 +0.3 5,655,189 - PS417_26170 0.88 -0.2
Or see this region's nucleotide sequence