Strain Fitness in Pseudomonas simiae WCS417 around PS417_25125

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,447,245	+		PS417_25115	0.88	-2.7
5,447,414	+				-0.2
5,447,588	-				-0.8
5,447,685	-		PS417_25120	0.18	-1.2
5,447,807	-		PS417_25120	0.41	-1.7
5,447,839	-		PS417_25120	0.47	-1.9
5,447,857	+		PS417_25120	0.50	+0.4
5,448,054	-		PS417_25120	0.87	-1.7
5,448,257	+				+0.7
5,448,261	+				+0.5
5,448,278	-				-0.0
5,448,295	-				-0.6
5,448,307	+		PS417_25125	0.11	+0.2
5,448,379	-		PS417_25125	0.17	+2.0
5,448,465	+		PS417_25125	0.25	+0.4
5,448,465	+		PS417_25125	0.25	+0.7
5,448,510	+		PS417_25125	0.28	-0.1
5,448,613	+		PS417_25125	0.37	-0.0
5,448,614	-		PS417_25125	0.37	-2.1
5,448,696	+		PS417_25125	0.45	-2.7
5,448,696	+		PS417_25125	0.45	+1.0
5,448,696	+		PS417_25125	0.45	-0.8
5,448,697	-		PS417_25125	0.45	-0.1
5,448,753	+		PS417_25125	0.49	-2.0
5,448,754	-		PS417_25125	0.50	-1.6
5,448,754	-		PS417_25125	0.50	-0.7
5,448,756	+		PS417_25125	0.50	+0.7
5,448,756	+		PS417_25125	0.50	-0.2
5,448,763	+		PS417_25125	0.50	-0.1
5,448,763	+		PS417_25125	0.50	-0.0
5,448,837	+		PS417_25125	0.57	+3.0
5,448,837	+		PS417_25125	0.57	+0.8
5,448,838	-		PS417_25125	0.57	+0.0
5,448,838	-		PS417_25125	0.57	-3.1
5,448,882	+		PS417_25125	0.61	+1.3
5,448,882	+		PS417_25125	0.61	-0.3
5,448,882	+		PS417_25125	0.61	+2.3
5,448,882	+		PS417_25125	0.61	-0.5
5,448,882	+		PS417_25125	0.61	-0.0
5,448,883	-		PS417_25125	0.61	-0.1
5,448,883	-		PS417_25125	0.61	+0.3
5,448,883	-		PS417_25125	0.61	+1.5
5,448,905	-		PS417_25125	0.63	-1.0
5,449,073	-		PS417_25125	0.77	+0.0
5,449,089	+		PS417_25125	0.79	+0.0
5,449,111	+		PS417_25125	0.80	-1.4
5,449,123	+		PS417_25125	0.81	-0.3
5,449,204	-		PS417_25125	0.88	+0.0
5,449,257	-				+1.9
5,449,257	-				-0.1
5,449,394	+				-1.6
5,449,394	+				-0.3
5,449,402	+				-3.4
5,449,402	+				+1.2
5,449,403	-				-0.3
5,449,412	+				+0.5
5,449,412	+				-1.5
5,449,413	-				+0.4
5,449,415	+				+0.2
5,449,415	+				-0.7
5,449,416	-				+0.7
5,449,561	+		PS417_25130	0.30	-1.4
5,449,561	+		PS417_25130	0.30	-0.5
5,449,623	-		PS417_25130	0.43	-1.0
5,449,623	-		PS417_25130	0.43	+0.6
5,449,623	-		PS417_25130	0.43	-0.2
5,449,625	+		PS417_25130	0.43	-0.1
5,449,625	+		PS417_25130	0.43	-0.7
5,449,625	+		PS417_25130	0.43	+1.0
5,449,626	-		PS417_25130	0.43	-0.4
5,449,626	-		PS417_25130	0.43	-0.0
5,449,626	-		PS417_25130	0.43	+1.6
5,449,626	-		PS417_25130	0.43	-0.1
5,449,639	+		PS417_25130	0.46	-0.3
5,449,640	-		PS417_25130	0.46	+0.6
5,449,806	+		PS417_25130	0.82	+1.1
5,449,808	+		PS417_25130	0.82	+1.0
5,449,809	-		PS417_25130	0.82	+1.4
5,449,809	-		PS417_25130	0.82	-2.2
5,449,809	-		PS417_25130	0.82	-1.2
5,449,816	+		PS417_25130	0.84	+0.2
5,449,816	+		PS417_25130	0.84	-0.2
5,449,817	-		PS417_25130	0.84	+1.7
5,449,859	+				-1.3
5,449,867	-				+0.2
5,449,960	+				-1.2
5,449,961	-				-0.7
5,449,970	+				-1.6
5,449,970	+				-0.1
5,449,970	+				+0.5
5,449,971	-				+0.2
5,449,984	-				-0.0
5,449,984	-				-1.9
5,450,039	+				-1.0
5,450,039	+				-0.9
5,450,040	-				-1.1
5,450,049	+				+1.4
5,450,050	-				-1.8
5,450,052	+				-0.3
5,450,053	-				+2.0
5,450,053	-				-0.6
5,450,086	+				+0.8
5,450,086	+				+0.9
5,450,087	-				-0.7
5,450,087	-				+0.3
5,450,087	-				+2.5
5,450,087	-				-0.9
5,450,087	-				-0.1
5,450,161	-				-1.8
5,450,162	+				-2.4
5,450,162	+				+0.4
5,450,162	+				-2.2
5,450,162	+				-0.1
5,450,163	-				-1.2
5,450,163	-				-2.0
5,450,163	-				+1.6
5,450,175	+				-0.5
5,450,181	+				-0.3
5,450,238	+				-1.0
5,450,238	+				-1.1
5,450,239	-				+1.5
5,450,239	-				-0.3
5,450,284	-				+0.8