Strain Fitness in Pseudomonas simiae WCS417 around PS417_24465

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_24455 and PS417_24460 are separated by 178 nucleotidesPS417_24460 and PS417_24465 are separated by 83 nucleotidesPS417_24465 and PS417_24470 are separated by 0 nucleotides PS417_24455: PS417_24455 - membrane protein, at 5,309,517 to 5,310,395 _24455 PS417_24460: PS417_24460 - hypothetical protein, at 5,310,574 to 5,310,990 _24460 PS417_24465: PS417_24465 - metallopeptidase, at 5,311,074 to 5,311,961 _24465 PS417_24470: PS417_24470 - hypothetical protein, at 5,311,962 to 5,312,933 _24470 Position (kb) 5311 5312Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5310.100 kb on + strand, within PS417_24455at 5310.101 kb on - strand, within PS417_24455at 5310.157 kb on - strand, within PS417_24455at 5310.290 kb on - strand, within PS417_24455at 5310.440 kb on + strandat 5310.499 kb on + strandat 5310.573 kb on + strandat 5310.573 kb on + strandat 5310.573 kb on + strandat 5310.574 kb on - strandat 5310.574 kb on - strandat 5310.784 kb on + strand, within PS417_24460at 5310.784 kb on + strand, within PS417_24460at 5310.784 kb on + strand, within PS417_24460at 5310.785 kb on - strand, within PS417_24460at 5310.976 kb on + strandat 5310.988 kb on + strandat 5311.009 kb on - strandat 5311.015 kb on - strandat 5311.015 kb on - strandat 5311.015 kb on - strandat 5311.017 kb on + strandat 5311.018 kb on - strandat 5311.018 kb on - strandat 5311.018 kb on - strandat 5311.018 kb on - strandat 5311.078 kb on + strandat 5311.401 kb on + strand, within PS417_24465at 5311.401 kb on + strand, within PS417_24465at 5311.401 kb on + strand, within PS417_24465at 5311.402 kb on - strand, within PS417_24465at 5311.506 kb on + strand, within PS417_24465at 5311.506 kb on + strand, within PS417_24465at 5311.507 kb on - strand, within PS417_24465at 5311.575 kb on + strand, within PS417_24465at 5311.959 kb on + strandat 5311.960 kb on - strandat 5311.960 kb on - strandat 5312.032 kb on + strandat 5312.173 kb on - strand, within PS417_24470at 5312.173 kb on - strand, within PS417_24470at 5312.405 kb on - strand, within PS417_24470at 5312.527 kb on - strand, within PS417_24470at 5312.527 kb on - strand, within PS417_24470at 5312.556 kb on + strand, within PS417_24470at 5312.557 kb on - strand, within PS417_24470at 5312.557 kb on - strand, within PS417_24470at 5312.557 kb on - strand, within PS417_24470at 5312.685 kb on + strand, within PS417_24470at 5312.685 kb on + strand, within PS417_24470at 5312.686 kb on - strand, within PS417_24470at 5312.686 kb on - strand, within PS417_24470at 5312.686 kb on - strand, within PS417_24470at 5312.686 kb on - strand, within PS417_24470at 5312.686 kb on - strand, within PS417_24470at 5312.686 kb on - strand, within PS417_24470at 5312.686 kb on - strand, within PS417_24470at 5312.686 kb on - strand, within PS417_24470at 5312.686 kb on - strand, within PS417_24470at 5312.707 kb on - strand, within PS417_24470at 5312.707 kb on - strand, within PS417_24470at 5312.808 kb on + strand, within PS417_24470at 5312.808 kb on + strandat 5312.809 kb on - strand, within PS417_24470at 5312.809 kb on - strand, within PS417_24470at 5312.817 kb on + strand, within PS417_24470at 5312.897 kb on + strandat 5312.897 kb on + strandat 5312.898 kb on - strandat 5312.920 kb on + strandat 5312.921 kb on - strandat 5312.921 kb on - strandat 5312.921 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
remove
5,310,100 + PS417_24455 0.66 -2.5
5,310,101 - PS417_24455 0.66 +0.8
5,310,157 - PS417_24455 0.73 +0.3
5,310,290 - PS417_24455 0.88 +0.6
5,310,440 + -0.6
5,310,499 + -1.6
5,310,573 + +0.1
5,310,573 + -0.4
5,310,573 + +0.1
5,310,574 - +0.3
5,310,574 - -1.5
5,310,784 + PS417_24460 0.50 +2.5
5,310,784 + PS417_24460 0.50 +0.4
5,310,784 + PS417_24460 0.50 -0.4
5,310,785 - PS417_24460 0.51 +1.0
5,310,976 + -2.6
5,310,988 + -0.3
5,311,009 - +1.2
5,311,015 - +0.8
5,311,015 - -0.6
5,311,015 - +1.9
5,311,017 + -1.2
5,311,018 - -1.2
5,311,018 - +0.8
5,311,018 - -0.2
5,311,018 - -1.3
5,311,078 + -0.0
5,311,401 + PS417_24465 0.37 +2.3
5,311,401 + PS417_24465 0.37 +1.2
5,311,401 + PS417_24465 0.37 -0.1
5,311,402 - PS417_24465 0.37 -0.4
5,311,506 + PS417_24465 0.49 -1.4
5,311,506 + PS417_24465 0.49 +0.6
5,311,507 - PS417_24465 0.49 +0.2
5,311,575 + PS417_24465 0.56 -1.0
5,311,959 + -0.1
5,311,960 - +1.3
5,311,960 - -1.4
5,312,032 + +1.6
5,312,173 - PS417_24470 0.22 -0.2
5,312,173 - PS417_24470 0.22 -0.0
5,312,405 - PS417_24470 0.46 +1.6
5,312,527 - PS417_24470 0.58 +0.0
5,312,527 - PS417_24470 0.58 -1.0
5,312,556 + PS417_24470 0.61 +0.4
5,312,557 - PS417_24470 0.61 +1.0
5,312,557 - PS417_24470 0.61 -0.1
5,312,557 - PS417_24470 0.61 +0.1
5,312,685 + PS417_24470 0.74 +1.5
5,312,685 + PS417_24470 0.74 +1.0
5,312,686 - PS417_24470 0.74 -3.0
5,312,686 - PS417_24470 0.74 +0.2
5,312,686 - PS417_24470 0.74 -0.5
5,312,686 - PS417_24470 0.74 -0.6
5,312,686 - PS417_24470 0.74 -0.7
5,312,686 - PS417_24470 0.74 -0.1
5,312,686 - PS417_24470 0.74 -0.0
5,312,686 - PS417_24470 0.74 -0.8
5,312,686 - PS417_24470 0.74 -0.6
5,312,707 - PS417_24470 0.77 -0.7
5,312,707 - PS417_24470 0.77 +1.4
5,312,808 + PS417_24470 0.87 +0.9
5,312,808 + +2.3
5,312,809 - PS417_24470 0.87 -0.9
5,312,809 - PS417_24470 0.87 -0.5
5,312,817 + PS417_24470 0.88 +0.4
5,312,897 + +0.4
5,312,897 + +0.4
5,312,898 - +0.3
5,312,920 + -0.7
5,312,921 - -0.2
5,312,921 - +2.1
5,312,921 - -0.5

Or see this region's nucleotide sequence