Strain Fitness in Pseudomonas simiae WCS417 around PS417_21470

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,658,947	-				+2.9
4,659,048	+				-1.4
4,659,049	-				-0.0
4,659,052	-				+0.6
4,659,052	-				-2.3
4,659,399	+		PS417_21465	0.62	-1.7
4,659,399	+		PS417_21465	0.62	-0.1
4,659,399	+		PS417_21465	0.62	+0.1
4,659,406	+		PS417_21465	0.64	+1.0
4,659,471	-		PS417_21465	0.75	+0.0
4,659,579	+				-0.4
4,659,579	+				-0.4
4,659,580	-				-0.9
4,659,589	-				-1.2
4,659,666	+				-0.6
4,659,666	+				-0.4
4,659,667	-				-1.5
4,659,667	-				-2.2
4,659,667	-				-2.5
4,659,779	+				+0.4
4,659,780	-				-0.9
4,659,780	-				+2.4
4,659,781	+				+1.6
4,659,781	+				+0.8
4,659,781	+				+0.1
4,659,781	+				+1.6
4,659,782	-				-1.8
4,659,782	-				-0.7
4,659,782	-				-0.3
4,659,782	-				-0.1
4,659,782	-				+0.3
4,659,782	-				+0.3
4,659,782	-				-0.4
4,659,782	-				-0.3
4,660,135	+		PS417_21470	0.39	+0.2
4,660,136	-		PS417_21470	0.39	-0.7
4,660,136	-		PS417_21470	0.39	-0.7
4,660,136	-		PS417_21470	0.39	-2.0
4,660,140	-		PS417_21470	0.40	-0.4
4,660,140	-		PS417_21470	0.40	-0.9
4,660,140	-		PS417_21470	0.40	+0.5
4,660,234	+		PS417_21470	0.49	-1.3
4,660,261	+		PS417_21470	0.52	+0.4
4,660,261	+		PS417_21470	0.52	+0.1
4,660,261	+		PS417_21470	0.52	-0.1
4,660,261	+		PS417_21470	0.52	-0.4
4,660,261	+		PS417_21470	0.52	-1.1
4,660,261	+		PS417_21470	0.52	-0.1
4,660,262	-		PS417_21470	0.52	-1.7
4,660,262	-		PS417_21470	0.52	-0.5
4,660,262	-		PS417_21470	0.52	+0.1
4,660,262	-		PS417_21470	0.52	-0.7
4,660,264	+		PS417_21470	0.52	-0.2
4,660,265	-		PS417_21470	0.52	+0.4
4,660,301	+				+0.6
4,660,310	+		PS417_21470	0.57	+0.1
4,660,310	+		PS417_21470	0.57	-0.3
4,660,348	+		PS417_21470	0.61	-0.6
4,660,349	-		PS417_21470	0.61	-0.2
4,660,349	-		PS417_21470	0.61	-0.3
4,660,349	-		PS417_21470	0.61	-1.8
4,660,349	-		PS417_21470	0.61	-1.8
4,660,354	+		PS417_21470	0.61	+0.4
4,660,451	+		PS417_21470	0.71	+0.1
4,660,513	+		PS417_21470	0.78	-0.1
4,660,513	+		PS417_21470	0.78	-0.5
4,660,513	+		PS417_21470	0.78	-0.4
4,660,514	-		PS417_21470	0.78	+0.6
4,660,514	-		PS417_21470	0.78	-2.3
4,660,514	-		PS417_21470	0.78	-0.8
4,660,514	-		PS417_21470	0.78	-0.3
4,660,514	-		PS417_21470	0.78	+1.1
4,660,514	-		PS417_21470	0.78	-2.1
4,660,672	-				-0.4
4,660,686	-				-0.2
4,660,686	-				+1.0
4,660,686	-				-0.0
4,660,757	-				+0.6
4,660,757	-				-0.4
4,660,819	+				-0.2
4,660,852	+		PS417_21475	0.15	-2.2
4,660,852	+		PS417_21475	0.15	-3.8
4,660,852	+		PS417_21475	0.15	-0.9
4,661,179	+		PS417_21475	0.64	+1.0
4,661,179	+		PS417_21475	0.64	-1.2
4,661,179	+		PS417_21475	0.64	-0.4
4,661,401	+				-0.7
4,661,508	-		PS417_21480	0.11	-0.7