Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21420 and PS417_21425 are separated by 1 nucleotides PS417_21425 and PS417_21430 overlap by 1 nucleotides
PS417_21420: PS417_21420 - aminodeoxychorismate lyase, at 4,651,595 to 4,652,740
_21420
PS417_21425: PS417_21425 - 4-amino-4-deoxychorismate lyase, at 4,652,742 to 4,653,557
_21425
PS417_21430: PS417_21430 - 3-oxoacyl-ACP synthase, at 4,653,557 to 4,654,801
_21430
Position (kb) 4652
4653
4654 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4651.827 kb on + strand, within PS417_21420 at 4651.827 kb on + strand, within PS417_21420 at 4651.827 kb on + strand, within PS417_21420 at 4651.852 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.928 kb on - strand, within PS417_21420 at 4651.929 kb on + strand, within PS417_21420 at 4651.929 kb on + strand, within PS417_21420 at 4651.930 kb on - strand, within PS417_21420 at 4651.975 kb on - strand, within PS417_21420 at 4651.992 kb on + strand, within PS417_21420 at 4651.992 kb on + strand, within PS417_21420 at 4651.992 kb on + strand, within PS417_21420 at 4651.993 kb on - strand, within PS417_21420 at 4651.993 kb on - strand, within PS417_21420 at 4651.993 kb on - strand, within PS417_21420 at 4652.018 kb on + strand, within PS417_21420 at 4652.124 kb on + strand, within PS417_21420 at 4652.136 kb on + strand, within PS417_21420 at 4652.177 kb on + strand, within PS417_21420 at 4652.178 kb on - strand, within PS417_21420 at 4652.244 kb on + strand, within PS417_21420 at 4652.244 kb on + strand, within PS417_21420 at 4652.245 kb on - strand, within PS417_21420 at 4652.245 kb on - strand, within PS417_21420 at 4652.245 kb on - strand at 4652.245 kb on - strand, within PS417_21420 at 4652.409 kb on + strand, within PS417_21420 at 4652.410 kb on - strand, within PS417_21420 at 4652.435 kb on + strand, within PS417_21420 at 4652.478 kb on + strand, within PS417_21420 at 4652.524 kb on - strand, within PS417_21420 at 4652.720 kb on + strand at 4652.720 kb on + strand at 4652.720 kb on + strand at 4652.720 kb on + strand at 4652.720 kb on + strand at 4652.720 kb on + strand at 4652.721 kb on - strand at 4652.721 kb on - strand at 4652.721 kb on - strand at 4653.015 kb on + strand, within PS417_21425 at 4653.228 kb on - strand, within PS417_21425 at 4653.493 kb on + strand at 4653.903 kb on + strand, within PS417_21430 at 4653.904 kb on - strand, within PS417_21430 at 4654.310 kb on - strand, within PS417_21430 at 4654.330 kb on - strand, within PS417_21430 at 4654.379 kb on - strand, within PS417_21430
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 4,651,827 + PS417_21420 0.20 -1.8 4,651,827 + PS417_21420 0.20 +0.0 4,651,827 + PS417_21420 0.20 +0.2 4,651,852 + PS417_21420 0.22 -0.9 4,651,920 + PS417_21420 0.28 -2.2 4,651,920 + PS417_21420 0.28 -0.7 4,651,920 + PS417_21420 0.28 +0.4 4,651,920 + PS417_21420 0.28 -0.3 4,651,920 + PS417_21420 0.28 -0.8 4,651,920 + PS417_21420 0.28 +0.1 4,651,920 + PS417_21420 0.28 -2.4 4,651,920 + PS417_21420 0.28 -0.6 4,651,920 + PS417_21420 0.28 +0.0 4,651,920 + PS417_21420 0.28 +0.8 4,651,920 + PS417_21420 0.28 -1.1 4,651,921 - PS417_21420 0.28 -0.4 4,651,921 - PS417_21420 0.28 +0.0 4,651,921 - PS417_21420 0.28 +0.1 4,651,921 - PS417_21420 0.28 -2.1 4,651,921 - PS417_21420 0.28 -0.3 4,651,928 - PS417_21420 0.29 -1.1 4,651,929 + PS417_21420 0.29 +0.0 4,651,929 + PS417_21420 0.29 -1.3 4,651,930 - PS417_21420 0.29 -2.3 4,651,975 - PS417_21420 0.33 -1.4 4,651,992 + PS417_21420 0.35 -1.7 4,651,992 + PS417_21420 0.35 -1.1 4,651,992 + PS417_21420 0.35 -1.9 4,651,993 - PS417_21420 0.35 -0.3 4,651,993 - PS417_21420 0.35 -0.1 4,651,993 - PS417_21420 0.35 -1.3 4,652,018 + PS417_21420 0.37 +1.0 4,652,124 + PS417_21420 0.46 -0.3 4,652,136 + PS417_21420 0.47 -1.7 4,652,177 + PS417_21420 0.51 -1.7 4,652,178 - PS417_21420 0.51 +0.5 4,652,244 + PS417_21420 0.57 +0.1 4,652,244 + PS417_21420 0.57 -1.5 4,652,245 - PS417_21420 0.57 +0.5 4,652,245 - PS417_21420 0.57 +0.1 4,652,245 - -1.0 4,652,245 - PS417_21420 0.57 -1.2 4,652,409 + PS417_21420 0.71 +0.7 4,652,410 - PS417_21420 0.71 -0.0 4,652,435 + PS417_21420 0.73 -1.1 4,652,478 + PS417_21420 0.77 -0.4 4,652,524 - PS417_21420 0.81 -1.2 4,652,720 + +0.1 4,652,720 + +0.7 4,652,720 + +1.0 4,652,720 + -1.8 4,652,720 + +0.7 4,652,720 + -0.3 4,652,721 - -0.8 4,652,721 - -1.6 4,652,721 - +0.2 4,653,015 + PS417_21425 0.33 -0.0 4,653,228 - PS417_21425 0.60 +2.6 4,653,493 + -1.0 4,653,903 + PS417_21430 0.28 +0.2 4,653,904 - PS417_21430 0.28 -1.3 4,654,310 - PS417_21430 0.60 +0.3 4,654,330 - PS417_21430 0.62 -1.4 4,654,379 - PS417_21430 0.66 +0.4
Or see this region's nucleotide sequence