Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01080 and PS417_01085 are separated by 24 nucleotides PS417_01085 and PS417_01090 are separated by 186 nucleotides
PS417_01080: PS417_01080 - acyl-CoA dehydrogenase, at 236,527 to 237,720
_01080
PS417_01085: PS417_01085 - monooxygenase, at 237,745 to 238,986
_01085
PS417_01090: PS417_01090 - hypothetical protein, at 239,173 to 239,937
_01090
Position (kb) 237
238
239 Strain fitness (log2 ratio) -2
-1
0
1
2 at 237.031 kb on - strand, within PS417_01080 at 237.031 kb on - strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.254 kb on + strand, within PS417_01080 at 237.438 kb on - strand, within PS417_01080 at 237.838 kb on + strand at 238.103 kb on + strand, within PS417_01085 at 238.103 kb on + strand, within PS417_01085 at 238.103 kb on + strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.163 kb on - strand, within PS417_01085 at 238.429 kb on + strand at 238.475 kb on + strand, within PS417_01085 at 238.475 kb on + strand, within PS417_01085 at 238.499 kb on + strand, within PS417_01085 at 238.499 kb on + strand at 238.499 kb on + strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085 at 238.758 kb on - strand, within PS417_01085 at 238.981 kb on - strand at 238.981 kb on - strand at 239.011 kb on - strand at 239.011 kb on - strand at 239.072 kb on - strand at 239.213 kb on + strand at 239.213 kb on + strand at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.377 kb on + strand, within PS417_01090 at 239.378 kb on - strand, within PS417_01090 at 239.591 kb on + strand, within PS417_01090 at 239.592 kb on - strand, within PS417_01090 at 239.635 kb on + strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.687 kb on + strand, within PS417_01090 at 239.838 kb on - strand, within PS417_01090 at 239.938 kb on - strand at 239.941 kb on + strand at 239.941 kb on + strand at 239.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 237,031 - PS417_01080 0.42 -1.1 237,031 - PS417_01080 0.42 -2.0 237,236 + PS417_01080 0.59 +0.8 237,236 + PS417_01080 0.59 -0.0 237,236 + PS417_01080 0.59 +0.4 237,254 + PS417_01080 0.61 -0.2 237,438 - PS417_01080 0.76 +0.0 237,838 + -0.3 238,103 + PS417_01085 0.29 -0.9 238,103 + PS417_01085 0.29 +0.0 238,103 + PS417_01085 0.29 +0.5 238,104 - PS417_01085 0.29 +0.2 238,104 - PS417_01085 0.29 -1.9 238,104 - PS417_01085 0.29 -2.4 238,104 - PS417_01085 0.29 -1.5 238,163 - PS417_01085 0.34 -0.2 238,429 + +1.5 238,475 + PS417_01085 0.59 -0.5 238,475 + PS417_01085 0.59 -2.3 238,499 + PS417_01085 0.61 +0.7 238,499 + +1.1 238,499 + PS417_01085 0.61 +0.3 238,500 - PS417_01085 0.61 -0.5 238,500 - PS417_01085 0.61 -0.3 238,758 - PS417_01085 0.82 -1.1 238,981 - -0.5 238,981 - -0.7 239,011 - -0.1 239,011 - +1.2 239,072 - -0.4 239,213 + -2.0 239,213 + -0.0 239,318 + PS417_01090 0.19 -1.0 239,318 + PS417_01090 0.19 -0.8 239,318 + PS417_01090 0.19 +0.1 239,377 + PS417_01090 0.27 +0.4 239,378 - PS417_01090 0.27 +2.6 239,591 + PS417_01090 0.55 -1.1 239,592 - PS417_01090 0.55 -1.6 239,635 + PS417_01090 0.60 +0.6 239,636 - PS417_01090 0.61 -0.9 239,636 - PS417_01090 0.61 -0.3 239,636 - PS417_01090 0.61 -0.0 239,636 - PS417_01090 0.61 -1.8 239,687 + PS417_01090 0.67 +0.2 239,838 - PS417_01090 0.87 -0.3 239,938 - -2.3 239,941 + -0.1 239,941 + -0.4 239,942 - +0.4
Or see this region's nucleotide sequence