Strain Fitness in Pseudomonas simiae WCS417 around PS417_01050

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_01045 and PS417_01050 overlap by 4 nucleotidesPS417_01050 and PS417_01055 are separated by 118 nucleotides PS417_01045: PS417_01045 - RND transporter, at 227,259 to 228,329 _01045 PS417_01050: PS417_01050 - ACR family transporter, at 228,326 to 231,391 _01050 PS417_01055: PS417_01055 - methyltransferase, at 231,510 to 232,136 _01055 Position (kb) 228 229 230 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 227.583 kb on + strand, within PS417_01045at 227.583 kb on + strand, within PS417_01045at 227.583 kb on + strand, within PS417_01045at 227.584 kb on - strand, within PS417_01045at 227.584 kb on - strandat 228.384 kb on - strandat 228.423 kb on - strandat 228.573 kb on - strandat 228.573 kb on - strandat 228.751 kb on - strand, within PS417_01050at 228.751 kb on - strand, within PS417_01050at 228.764 kb on + strand, within PS417_01050at 228.893 kb on + strand, within PS417_01050at 229.094 kb on + strand, within PS417_01050at 229.130 kb on + strand, within PS417_01050at 229.130 kb on + strand, within PS417_01050at 229.131 kb on - strand, within PS417_01050at 229.387 kb on + strand, within PS417_01050at 229.469 kb on + strand, within PS417_01050at 229.480 kb on + strand, within PS417_01050at 229.481 kb on - strand, within PS417_01050at 229.616 kb on + strand, within PS417_01050at 229.616 kb on + strand, within PS417_01050at 229.617 kb on - strand, within PS417_01050at 229.617 kb on - strand, within PS417_01050at 229.617 kb on - strand, within PS417_01050at 229.709 kb on + strand, within PS417_01050at 230.105 kb on + strand, within PS417_01050at 230.105 kb on + strand, within PS417_01050at 230.105 kb on + strand, within PS417_01050at 230.106 kb on - strand, within PS417_01050at 230.106 kb on - strand, within PS417_01050at 230.106 kb on - strand, within PS417_01050at 230.191 kb on + strand, within PS417_01050at 230.270 kb on + strand, within PS417_01050at 230.270 kb on + strand, within PS417_01050at 230.271 kb on - strand, within PS417_01050at 230.271 kb on - strand, within PS417_01050at 230.271 kb on - strand, within PS417_01050at 230.414 kb on + strand, within PS417_01050at 230.415 kb on - strand, within PS417_01050at 230.415 kb on - strand, within PS417_01050at 230.415 kb on - strand, within PS417_01050at 230.557 kb on + strand, within PS417_01050at 230.619 kb on + strand, within PS417_01050at 230.774 kb on - strand, within PS417_01050at 230.837 kb on + strand, within PS417_01050at 231.128 kb on + strandat 231.143 kb on + strandat 231.145 kb on + strandat 231.146 kb on - strandat 231.270 kb on - strandat 231.333 kb on - strandat 231.345 kb on - strandat 231.436 kb on + strandat 231.437 kb on - strandat 231.437 kb on - strandat 231.437 kb on - strandat 231.438 kb on + strandat 231.438 kb on + strandat 231.438 kb on + strandat 231.438 kb on + strandat 231.439 kb on - strandat 231.439 kb on - strandat 231.439 kb on - strandat 231.439 kb on - strandat 231.511 kb on + strandat 231.519 kb on - strandat 231.574 kb on + strand, within PS417_01055at 231.577 kb on + strand, within PS417_01055at 231.577 kb on + strand, within PS417_01055at 231.577 kb on + strand, within PS417_01055at 231.578 kb on - strand, within PS417_01055at 231.578 kb on - strand, within PS417_01055at 231.992 kb on + strand, within PS417_01055at 232.082 kb on - strandat 232.166 kb on + strandat 232.166 kb on + strandat 232.166 kb on + strandat 232.166 kb on + strandat 232.167 kb on - strandat 232.167 kb on - strandat 232.167 kb on - strandat 232.167 kb on - strandat 232.167 kb on - strandat 232.168 kb on + strandat 232.168 kb on + strandat 232.168 kb on + strandat 232.169 kb on - strandat 232.244 kb on - strandat 232.284 kb on + strandat 232.284 kb on + strandat 232.285 kb on - strandat 232.285 kb on - strandat 232.285 kb on - strandat 232.302 kb on + strandat 232.313 kb on + strandat 232.313 kb on + strandat 232.314 kb on - strandat 232.314 kb on - strandat 232.315 kb on + strandat 232.315 kb on + strandat 232.316 kb on - strandat 232.316 kb on - strandat 232.321 kb on + strandat 232.321 kb on + strandat 232.349 kb on + strandat 232.349 kb on + strandat 232.350 kb on - strandat 232.350 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
remove
227,583 + PS417_01045 0.30 -0.3
227,583 + PS417_01045 0.30 -2.1
227,583 + PS417_01045 0.30 +0.0
227,584 - PS417_01045 0.30 +3.6
227,584 - +0.6
228,384 - -2.0
228,423 - +2.3
228,573 - +0.0
228,573 - -1.7
228,751 - PS417_01050 0.14 +1.2
228,751 - PS417_01050 0.14 -0.5
228,764 + PS417_01050 0.14 -0.7
228,893 + PS417_01050 0.18 -2.1
229,094 + PS417_01050 0.25 +0.2
229,130 + PS417_01050 0.26 -1.7
229,130 + PS417_01050 0.26 +0.9
229,131 - PS417_01050 0.26 -0.5
229,387 + PS417_01050 0.35 -0.6
229,469 + PS417_01050 0.37 -1.3
229,480 + PS417_01050 0.38 -0.2
229,481 - PS417_01050 0.38 -0.4
229,616 + PS417_01050 0.42 -3.0
229,616 + PS417_01050 0.42 -0.8
229,617 - PS417_01050 0.42 +0.2
229,617 - PS417_01050 0.42 +0.7
229,617 - PS417_01050 0.42 -0.8
229,709 + PS417_01050 0.45 +0.2
230,105 + PS417_01050 0.58 -2.6
230,105 + PS417_01050 0.58 -0.4
230,105 + PS417_01050 0.58 +0.7
230,106 - PS417_01050 0.58 +1.3
230,106 - PS417_01050 0.58 -0.3
230,106 - PS417_01050 0.58 +0.4
230,191 + PS417_01050 0.61 +0.1
230,270 + PS417_01050 0.63 -0.3
230,270 + PS417_01050 0.63 +1.1
230,271 - PS417_01050 0.63 -1.1
230,271 - PS417_01050 0.63 +2.2
230,271 - PS417_01050 0.63 -0.5
230,414 + PS417_01050 0.68 +1.6
230,415 - PS417_01050 0.68 -0.8
230,415 - PS417_01050 0.68 -1.2
230,415 - PS417_01050 0.68 -1.4
230,557 + PS417_01050 0.73 -1.8
230,619 + PS417_01050 0.75 -1.0
230,774 - PS417_01050 0.80 -0.3
230,837 + PS417_01050 0.82 -1.4
231,128 + -0.7
231,143 + +0.1
231,145 + -0.4
231,146 - +0.8
231,270 - -1.8
231,333 - -1.8
231,345 - +0.4
231,436 + -0.4
231,437 - -1.1
231,437 - -0.9
231,437 - -0.0
231,438 + -0.0
231,438 + +0.5
231,438 + +0.1
231,438 + -1.0
231,439 - +0.7
231,439 - +0.4
231,439 - +0.2
231,439 - -0.5
231,511 + -0.2
231,519 - +0.6
231,574 + PS417_01055 0.10 +2.3
231,577 + PS417_01055 0.11 -0.2
231,577 + PS417_01055 0.11 -0.7
231,577 + PS417_01055 0.11 +0.1
231,578 - PS417_01055 0.11 -0.3
231,578 - PS417_01055 0.11 -1.4
231,992 + PS417_01055 0.77 -3.1
232,082 - +0.6
232,166 + -0.2
232,166 + -0.1
232,166 + +0.7
232,166 + +0.6
232,167 - -0.0
232,167 - -0.3
232,167 - -1.9
232,167 - -1.0
232,167 - -1.3
232,168 + -0.8
232,168 + -0.9
232,168 + +3.0
232,169 - -0.7
232,244 - +0.8
232,284 + -0.3
232,284 + +0.1
232,285 - +0.1
232,285 - -0.3
232,285 - -0.2
232,302 + -0.2
232,313 + -3.2
232,313 + -0.3
232,314 - -0.0
232,314 - -0.2
232,315 + +0.1
232,315 + +0.0
232,316 - +0.3
232,316 - -1.1
232,321 + +1.1
232,321 + +0.6
232,349 + -0.7
232,349 + -1.0
232,350 - +0.4
232,350 - -0.3

Or see this region's nucleotide sequence