Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00615 and PS417_00620 are separated by 330 nucleotides PS417_00620 and PS417_00625 are separated by 366 nucleotides
PS417_00615: PS417_00615 - hypothetical protein, at 126,081 to 126,839
_00615
PS417_00620: PS417_00620 - GntR family transcriptional regulator, at 127,170 to 127,880
_00620
PS417_00625: PS417_00625 - taurine dioxygenase, at 128,247 to 129,140
_00625
Position (kb) 127
128 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 126.182 kb on + strand, within PS417_00615 at 126.182 kb on + strand, within PS417_00615 at 126.182 kb on + strand, within PS417_00615 at 126.183 kb on - strand, within PS417_00615 at 126.183 kb on - strand, within PS417_00615 at 126.183 kb on - strand, within PS417_00615 at 126.210 kb on + strand, within PS417_00615 at 126.210 kb on + strand, within PS417_00615 at 126.211 kb on - strand, within PS417_00615 at 126.211 kb on - strand, within PS417_00615 at 126.281 kb on + strand, within PS417_00615 at 126.575 kb on - strand, within PS417_00615 at 126.952 kb on + strand at 126.952 kb on + strand at 126.952 kb on + strand at 127.063 kb on + strand at 127.064 kb on - strand at 127.112 kb on + strand at 127.137 kb on + strand at 127.167 kb on - strand at 127.432 kb on + strand, within PS417_00620 at 127.433 kb on - strand, within PS417_00620 at 127.478 kb on - strand, within PS417_00620 at 127.506 kb on - strand, within PS417_00620 at 127.506 kb on - strand, within PS417_00620 at 127.506 kb on - strand, within PS417_00620 at 127.594 kb on + strand, within PS417_00620 at 127.595 kb on - strand, within PS417_00620 at 127.833 kb on - strand at 127.833 kb on - strand at 127.898 kb on + strand at 127.899 kb on - strand at 127.899 kb on - strand at 127.901 kb on + strand at 127.902 kb on - strand at 127.902 kb on - strand at 127.937 kb on - strand at 127.981 kb on + strand at 127.981 kb on + strand at 127.995 kb on + strand at 127.996 kb on - strand at 128.024 kb on + strand at 128.024 kb on + strand at 128.034 kb on + strand at 128.106 kb on + strand at 128.120 kb on - strand at 128.204 kb on + strand at 128.207 kb on - strand at 128.261 kb on + strand at 128.262 kb on - strand at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.615 kb on + strand, within PS417_00625 at 128.616 kb on - strand, within PS417_00625 at 128.766 kb on + strand, within PS417_00625
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 126,182 + PS417_00615 0.13 +0.6 126,182 + PS417_00615 0.13 -0.1 126,182 + PS417_00615 0.13 -0.1 126,183 - PS417_00615 0.13 +1.9 126,183 - PS417_00615 0.13 -1.3 126,183 - PS417_00615 0.13 +1.1 126,210 + PS417_00615 0.17 -1.2 126,210 + PS417_00615 0.17 +1.0 126,211 - PS417_00615 0.17 -0.1 126,211 - PS417_00615 0.17 -1.6 126,281 + PS417_00615 0.26 +0.2 126,575 - PS417_00615 0.65 +3.2 126,952 + -1.6 126,952 + +0.3 126,952 + -0.7 127,063 + -1.0 127,064 - -1.1 127,112 + +3.9 127,137 + -0.2 127,167 - -1.6 127,432 + PS417_00620 0.37 -2.9 127,433 - PS417_00620 0.37 +3.7 127,478 - PS417_00620 0.43 +0.3 127,506 - PS417_00620 0.47 +0.1 127,506 - PS417_00620 0.47 +0.4 127,506 - PS417_00620 0.47 +0.3 127,594 + PS417_00620 0.60 +0.4 127,595 - PS417_00620 0.60 -1.4 127,833 - +1.2 127,833 - -0.5 127,898 + +0.5 127,899 - -2.0 127,899 - -1.1 127,901 + -1.7 127,902 - -0.2 127,902 - -0.2 127,937 - +0.6 127,981 + +0.1 127,981 + +0.8 127,995 + +1.2 127,996 - -0.5 128,024 + -0.9 128,024 + -0.1 128,034 + +0.6 128,106 + -0.4 128,120 - -1.2 128,204 + -1.3 128,207 - -0.3 128,261 + +0.7 128,262 - -1.0 128,613 + PS417_00625 0.41 +0.0 128,613 + PS417_00625 0.41 +0.2 128,613 + PS417_00625 0.41 +0.1 128,613 + PS417_00625 0.41 -0.1 128,613 + PS417_00625 0.41 -0.6 128,613 + PS417_00625 0.41 +2.0 128,614 - PS417_00625 0.41 -0.8 128,614 - PS417_00625 0.41 -1.6 128,614 - PS417_00625 0.41 -2.0 128,614 - PS417_00625 0.41 +0.5 128,614 - PS417_00625 0.41 +0.2 128,615 + PS417_00625 0.41 -0.6 128,616 - PS417_00625 0.41 +0.3 128,766 + PS417_00625 0.58 -1.8
Or see this region's nucleotide sequence