Strain Fitness in Pseudomonas simiae WCS417 around PS417_06110

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06100 and PS417_06105 are separated by 190 nucleotidesPS417_06105 and PS417_06110 are separated by 93 nucleotidesPS417_06110 and PS417_06115 are separated by 6 nucleotides PS417_06100: PS417_06100 - SAM-dependent methyltransferase, at 1,351,561 to 1,352,343 _06100 PS417_06105: PS417_06105 - TetR family transcriptional regulator, at 1,352,534 to 1,353,169 _06105 PS417_06110: PS417_06110 - RND transporter, at 1,353,263 to 1,354,363 _06110 PS417_06115: PS417_06115 - multidrug transporter AcrB, at 1,354,370 to 1,357,435 _06115 Position (kb) 1353 1354 1355Strain fitness (log2 ratio) -2 -1 0 1at 1352.317 kb on + strandat 1352.377 kb on + strandat 1352.377 kb on + strandat 1352.377 kb on + strandat 1352.377 kb on + strandat 1352.377 kb on + strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.378 kb on - strandat 1352.385 kb on + strandat 1352.386 kb on - strandat 1352.554 kb on + strandat 1352.555 kb on - strandat 1352.622 kb on + strand, within PS417_06105at 1352.623 kb on - strand, within PS417_06105at 1352.623 kb on - strand, within PS417_06105at 1352.623 kb on - strand, within PS417_06105at 1352.879 kb on - strand, within PS417_06105at 1352.925 kb on + strand, within PS417_06105at 1352.925 kb on + strand, within PS417_06105at 1352.926 kb on - strand, within PS417_06105at 1352.926 kb on - strand, within PS417_06105at 1353.055 kb on + strand, within PS417_06105at 1353.179 kb on + strandat 1353.205 kb on + strandat 1353.214 kb on - strandat 1353.223 kb on + strandat 1353.235 kb on + strandat 1353.271 kb on + strandat 1353.272 kb on - strandat 1353.848 kb on - strand, within PS417_06110at 1354.016 kb on - strandat 1354.083 kb on + strand, within PS417_06110at 1354.084 kb on - strand, within PS417_06110at 1354.084 kb on - strand, within PS417_06110at 1354.084 kb on - strand, within PS417_06110at 1354.157 kb on + strand, within PS417_06110at 1354.157 kb on + strand, within PS417_06110at 1354.157 kb on + strand, within PS417_06110at 1354.189 kb on + strand, within PS417_06110at 1354.604 kb on + strandat 1354.798 kb on + strand, within PS417_06115at 1354.798 kb on + strand, within PS417_06115at 1354.799 kb on - strand, within PS417_06115at 1354.802 kb on + strand, within PS417_06115at 1354.802 kb on + strand, within PS417_06115at 1354.802 kb on + strand, within PS417_06115at 1354.802 kb on + strand, within PS417_06115at 1354.803 kb on - strand, within PS417_06115at 1354.829 kb on + strand, within PS417_06115at 1354.830 kb on - strand, within PS417_06115at 1354.914 kb on + strand, within PS417_06115at 1355.198 kb on + strand, within PS417_06115at 1355.198 kb on + strand, within PS417_06115

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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1,352,317 + +0.3
1,352,377 + +0.1
1,352,377 + +0.2
1,352,377 + -0.7
1,352,377 + -1.5
1,352,377 + +0.0
1,352,378 - +0.4
1,352,378 - +0.2
1,352,378 - -0.3
1,352,378 - -0.8
1,352,378 - +1.4
1,352,378 - -1.2
1,352,378 - -0.2
1,352,385 + -0.4
1,352,386 - -0.1
1,352,554 + +0.4
1,352,555 - -0.2
1,352,622 + PS417_06105 0.14 -0.3
1,352,623 - PS417_06105 0.14 -0.0
1,352,623 - PS417_06105 0.14 +1.6
1,352,623 - PS417_06105 0.14 +0.4
1,352,879 - PS417_06105 0.54 -1.8
1,352,925 + PS417_06105 0.61 -0.0
1,352,925 + PS417_06105 0.61 +0.3
1,352,926 - PS417_06105 0.62 -2.2
1,352,926 - PS417_06105 0.62 +0.5
1,353,055 + PS417_06105 0.82 -0.0
1,353,179 + -0.4
1,353,205 + -1.1
1,353,214 - +0.7
1,353,223 + -0.3
1,353,235 + -0.1
1,353,271 + -0.1
1,353,272 - -0.8
1,353,848 - PS417_06110 0.53 -0.7
1,354,016 - +0.6
1,354,083 + PS417_06110 0.74 -1.6
1,354,084 - PS417_06110 0.75 -1.7
1,354,084 - PS417_06110 0.75 +0.4
1,354,084 - PS417_06110 0.75 -0.2
1,354,157 + PS417_06110 0.81 -1.2
1,354,157 + PS417_06110 0.81 -1.2
1,354,157 + PS417_06110 0.81 +1.4
1,354,189 + PS417_06110 0.84 -2.2
1,354,604 + -0.1
1,354,798 + PS417_06115 0.14 -1.7
1,354,798 + PS417_06115 0.14 +0.2
1,354,799 - PS417_06115 0.14 +0.2
1,354,802 + PS417_06115 0.14 -1.7
1,354,802 + PS417_06115 0.14 -0.6
1,354,802 + PS417_06115 0.14 +1.6
1,354,802 + PS417_06115 0.14 +0.0
1,354,803 - PS417_06115 0.14 -0.1
1,354,829 + PS417_06115 0.15 -0.4
1,354,830 - PS417_06115 0.15 +0.1
1,354,914 + PS417_06115 0.18 -0.9
1,355,198 + PS417_06115 0.27 -1.6
1,355,198 + PS417_06115 0.27 +0.1

Or see this region's nucleotide sequence