Strain Fitness in Pseudomonas simiae WCS417 around PS417_05610

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,262,249	+		PS417_05600	0.84	-0.8
1,262,249	+		PS417_05600	0.84	+0.0
1,262,249	+		PS417_05600	0.84	-2.1
1,262,249	+		PS417_05600	0.84	+0.1
1,262,249	+		PS417_05600	0.84	-0.3
1,262,249	+		PS417_05600	0.84	-0.4
1,262,249	+		PS417_05600	0.84	-0.8
1,262,250	-		PS417_05600	0.84	-0.2
1,262,250	-		PS417_05600	0.84	+0.9
1,262,253	+		PS417_05600	0.84	-0.6
1,262,253	+		PS417_05600	0.84	+0.5
1,262,254	-		PS417_05600	0.84	+0.0
1,262,570	-				-1.4
1,262,606	-				-0.5
1,263,010	+				-1.8
1,263,070	-				+0.2
1,263,089	+				-0.7
1,263,089	+				+0.7
1,263,089	+				+0.3
1,263,089	+				+0.0
1,263,089	+				-0.1
1,263,089	+				+0.8
1,263,093	+				+0.3
1,263,405	+		PS417_05610	0.72	+2.8
1,263,406	-		PS417_05610	0.72	-1.2
1,263,444	+		PS417_05610	0.80	-1.7
1,263,444	+		PS417_05610	0.80	+1.1
1,263,445	-		PS417_05610	0.80	+3.4
1,263,445	-		PS417_05610	0.80	+0.3
1,263,445	-		PS417_05610	0.80	-0.8
1,263,466	-		PS417_05610	0.85	+0.4
1,263,557	+				-1.0
1,263,560	+				+1.2
1,263,560	+				+0.5
1,263,560	+				-0.2
1,263,560	+				+0.3
1,263,569	-				-1.7
1,263,570	+				+1.0
1,263,611	-				-0.5
1,263,611	-				+0.2
1,263,616	-				+0.4
1,263,727	-				-0.6
1,263,766	-		PS417_05615	0.12	+0.8
1,263,903	+		PS417_05615	0.74	-1.2
1,263,904	-		PS417_05615	0.75	-0.8
1,263,904	-		PS417_05615	0.75	-1.4
1,263,904	-		PS417_05615	0.75	+1.6
1,263,904	-		PS417_05615	0.75	-0.5
1,263,940	+				-0.3
1,263,941	-				-1.0
1,263,954	+				-1.5
1,263,954	+				-0.2
1,263,954	+				-0.4
1,263,954	+				+0.8
1,263,954	+				-0.7
1,263,954	+				+1.1
1,263,955	-				-1.4
1,263,955	-				+0.2
1,263,955	-				-0.7
1,263,955	-				+0.3
1,263,955	-				+0.7
1,263,955	-				-1.5
1,263,955	-				-1.0
1,263,955	-				-3.0
1,263,955	-				-0.6
1,263,958	+				-2.4
1,263,959	-				+0.6
1,263,959	-				+4.5
1,263,959	-				-1.8
1,263,959	-				+0.6
1,264,043	+				-0.2
1,264,088	+				+2.5
1,264,088	+				+0.0
1,264,088	+				-1.7
1,264,088	+				+0.4
1,264,088	+				-2.5
1,264,088	+				+1.5
1,264,088	+				+0.3
1,264,089	-				+0.1
1,264,089	-				-0.5
1,264,089	-				+0.2
1,264,089	-				-1.0
1,264,168	-				+0.2
1,264,185	+				-0.2
1,264,185	+				-0.1
1,264,186	-				+1.4
1,264,186	-				+1.9
1,264,211	-				+0.8
1,264,211	-				+0.6
1,264,311	+				+2.6
1,264,312	-		PS417_05620	0.18	+0.3
1,264,329	+		PS417_05620	0.21	+0.3
1,264,503	+		PS417_05620	0.50	-1.3
1,264,504	-		PS417_05620	0.50	+0.3
1,264,504	-		PS417_05620	0.50	-0.2