Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02155 and PS417_02160 are separated by 278 nucleotides PS417_02160 and PS417_02165 overlap by 4 nucleotides PS417_02165 and PS417_02170 overlap by 4 nucleotides PS417_02170 and PS417_02175 are separated by 227 nucleotides
PS417_02155: PS417_02155 - chemotaxis protein, at 482,596 to 484,221
_02155
PS417_02160: PS417_02160 - hypothetical protein, at 484,500 to 484,730
_02160
PS417_02165: PS417_02165 - ZapA, at 484,727 to 485,020
_02165
PS417_02170: PS417_02170 - acyl-CoA dehydrogenase, at 485,017 to 486,819
_02170
PS417_02175: PS417_02175 - transcriptional regulator, at 487,047 to 491,000
_02175
Position (kb) 485
486
487 Strain fitness (log2 ratio) -2
-1
0
1
2 at 484.201 kb on - strand at 484.206 kb on + strand at 484.209 kb on + strand at 484.210 kb on - strand at 484.303 kb on - strand at 484.381 kb on + strand at 484.683 kb on - strand, within PS417_02160 at 484.859 kb on + strand, within PS417_02165 at 484.859 kb on + strand, within PS417_02165 at 484.884 kb on + strand, within PS417_02165 at 484.885 kb on - strand, within PS417_02165 at 485.096 kb on - strand at 485.226 kb on + strand, within PS417_02170 at 485.525 kb on + strand, within PS417_02170 at 485.526 kb on - strand, within PS417_02170 at 485.528 kb on + strand, within PS417_02170 at 485.529 kb on - strand, within PS417_02170 at 485.529 kb on - strand, within PS417_02170 at 485.529 kb on - strand, within PS417_02170 at 485.556 kb on - strand, within PS417_02170 at 485.647 kb on + strand, within PS417_02170 at 485.882 kb on + strand, within PS417_02170 at 485.882 kb on + strand, within PS417_02170 at 485.988 kb on - strand, within PS417_02170 at 486.257 kb on + strand, within PS417_02170 at 486.499 kb on + strand, within PS417_02170 at 486.773 kb on + strand at 486.774 kb on - strand at 486.827 kb on + strand at 486.828 kb on - strand at 487.095 kb on - strand at 487.431 kb on + strand at 487.431 kb on + strand at 487.432 kb on - strand at 487.798 kb on + strand, within PS417_02175
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 484,201 - -0.1 484,206 + -0.1 484,209 + +0.5 484,210 - +0.3 484,303 - +1.0 484,381 + +0.4 484,683 - PS417_02160 0.79 -0.6 484,859 + PS417_02165 0.45 +0.7 484,859 + PS417_02165 0.45 +0.4 484,884 + PS417_02165 0.53 -1.2 484,885 - PS417_02165 0.54 -0.2 485,096 - +0.7 485,226 + PS417_02170 0.12 +1.0 485,525 + PS417_02170 0.28 -0.0 485,526 - PS417_02170 0.28 +0.0 485,528 + PS417_02170 0.28 +0.9 485,529 - PS417_02170 0.28 +2.4 485,529 - PS417_02170 0.28 -0.4 485,529 - PS417_02170 0.28 -0.3 485,556 - PS417_02170 0.30 +0.4 485,647 + PS417_02170 0.35 -1.3 485,882 + PS417_02170 0.48 +0.7 485,882 + PS417_02170 0.48 +0.1 485,988 - PS417_02170 0.54 +0.8 486,257 + PS417_02170 0.69 +0.1 486,499 + PS417_02170 0.82 +0.5 486,773 + +1.1 486,774 - -1.8 486,827 + +1.9 486,828 - +0.1 487,095 - -0.1 487,431 + -0.3 487,431 + -1.3 487,432 - +0.9 487,798 + PS417_02175 0.19 +0.1
Or see this region's nucleotide sequence