Strain Fitness in Pseudomonas simiae WCS417 around PS417_09815

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,128,894	+		PS417_09810	0.62	+0.3
2,128,928	-		PS417_09810	0.65	-0.9
2,128,928	-		PS417_09810	0.65	+0.3
2,128,974	+		PS417_09810	0.68	+0.5
2,128,975	-		PS417_09810	0.68	+0.3
2,129,000	-		PS417_09810	0.70	+0.0
2,129,042	-		PS417_09810	0.74	-2.5
2,129,152	+		PS417_09810	0.82	+0.3
2,129,152	+		PS417_09810	0.82	+0.8
2,129,170	+		PS417_09810	0.84	-0.7
2,129,171	-		PS417_09810	0.84	+0.2
2,129,171	-		PS417_09810	0.84	+1.4
2,129,171	-		PS417_09810	0.84	-2.6
2,129,300	+				+1.0
2,129,408	-				-1.9
2,129,408	-				+0.3
2,129,477	-				+0.1
2,129,477	-				-1.4
2,129,477	-				-1.5
2,129,480	+				+0.1
2,129,481	-				+0.4
2,129,557	-				+0.6
2,129,557	-				-0.6
2,129,726	+		PS417_09815	0.25	+1.7
2,129,745	+		PS417_09815	0.29	-1.9
2,129,745	+		PS417_09815	0.29	-0.4
2,129,746	-		PS417_09815	0.29	+0.3
2,129,753	-		PS417_09815	0.30	+0.4
2,129,754	+		PS417_09815	0.30	+0.3
2,129,754	+		PS417_09815	0.30	+0.1
2,129,754	+		PS417_09815	0.30	+0.6
2,129,754	+		PS417_09815	0.30	+1.7
2,129,754	+		PS417_09815	0.30	-1.3
2,129,755	-		PS417_09815	0.30	+1.6
2,129,755	-		PS417_09815	0.30	-0.2
2,129,778	+		PS417_09815	0.34	+0.4
2,129,808	+		PS417_09815	0.39	+0.0
2,129,808	+		PS417_09815	0.39	+0.1
2,129,808	+				-1.5
2,129,809	-		PS417_09815	0.39	+0.4
2,129,809	-		PS417_09815	0.39	-0.4
2,129,811	-				-0.4
2,129,864	-		PS417_09815	0.48	-0.4
2,130,196	-				-0.2
2,130,219	+				+0.1
2,130,219	+				-1.1
2,130,220	-				+0.3
2,130,315	+				-2.2
2,130,315	+				+0.4
2,130,315	+				-1.0
2,130,315	+				+0.1
2,130,315	+				+0.2
2,130,315	+				+1.4
2,130,315	+				+0.1
2,130,315	+				-2.5
2,130,316	-				-0.8
2,130,700	-		PS417_09825	0.30	-0.0
2,130,882	+		PS417_09825	0.79	-0.4
2,130,882	+		PS417_09825	0.79	+0.5
2,130,883	-		PS417_09825	0.79	-0.7
2,130,910	+		PS417_09825	0.86	+0.8
2,130,910	+		PS417_09825	0.86	-0.4
2,130,911	-		PS417_09825	0.86	-1.1
2,130,911	-		PS417_09825	0.86	+0.0
2,130,912	+		PS417_09825	0.87	+0.8
2,130,912	+		PS417_09825	0.87	+0.5
2,130,912	+		PS417_09825	0.87	+0.8
2,130,913	-		PS417_09825	0.87	-2.5
2,130,913	-		PS417_09825	0.87	-1.3
2,130,913	-		PS417_09825	0.87	-0.6
2,130,913	-				+3.2
2,130,913	-		PS417_09825	0.87	+1.0
2,130,961	+				+0.9
2,130,961	+				+0.4
2,130,961	+				-0.2
2,130,961	+				+0.2
2,130,962	-				-0.3
2,130,962	-				+0.2
2,130,989	+				-0.8
2,131,035	+				-1.0
2,131,074	+				+0.4
2,131,075	-				-2.2