Strain Fitness in Pseudomonas simiae WCS417 around PS417_00780

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_00770 and PS417_00775 are separated by 63 nucleotidesPS417_00775 and PS417_00780 are separated by 15 nucleotidesPS417_00780 and PS417_00785 are separated by 272 nucleotidesPS417_00785 and PS417_00790 are separated by 40 nucleotides PS417_00770: PS417_00770 - autotransporter, at 171,401 to 173,989 _00770 PS417_00775: PS417_00775 - hypothetical protein, at 174,053 to 174,640 _00775 PS417_00780: PS417_00780 - hypothetical protein, at 174,656 to 175,267 _00780 PS417_00785: PS417_00785 - hypothetical protein, at 175,540 to 176,121 _00785 PS417_00790: PS417_00790 - curli production assembly protein CsgG, at 176,162 to 176,842 _00790 Position (kb) 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 173.672 kb on + strand, within PS417_00770at 173.807 kb on + strandat 173.808 kb on - strandat 173.808 kb on - strandat 173.860 kb on + strandat 173.861 kb on - strandat 173.861 kb on - strandat 173.864 kb on + strandat 173.864 kb on + strandat 173.864 kb on + strandat 173.864 kb on + strandat 173.864 kb on + strandat 173.864 kb on + strandat 173.864 kb on + strandat 173.864 kb on + strandat 173.864 kb on + strandat 173.865 kb on - strandat 173.865 kb on - strandat 173.865 kb on - strandat 173.865 kb on - strandat 173.888 kb on + strandat 173.889 kb on - strandat 173.889 kb on - strandat 173.922 kb on - strandat 173.922 kb on - strandat 173.988 kb on - strandat 173.997 kb on + strandat 173.997 kb on + strandat 174.005 kb on + strandat 174.005 kb on + strandat 174.005 kb on + strandat 174.006 kb on - strandat 174.088 kb on + strandat 174.088 kb on + strandat 174.313 kb on - strand, within PS417_00775at 174.313 kb on - strand, within PS417_00775at 174.345 kb on + strand, within PS417_00775at 174.345 kb on + strandat 174.345 kb on + strand, within PS417_00775at 174.345 kb on + strand, within PS417_00775at 174.345 kb on + strand, within PS417_00775at 174.345 kb on + strand, within PS417_00775at 174.346 kb on - strand, within PS417_00775at 174.346 kb on - strand, within PS417_00775at 174.346 kb on - strand, within PS417_00775at 174.493 kb on + strand, within PS417_00775at 174.494 kb on - strand, within PS417_00775at 174.494 kb on - strand, within PS417_00775at 174.494 kb on - strand, within PS417_00775at 174.501 kb on + strand, within PS417_00775at 174.501 kb on + strand, within PS417_00775at 174.501 kb on + strand, within PS417_00775at 174.501 kb on + strand, within PS417_00775at 174.502 kb on - strand, within PS417_00775at 174.502 kb on - strand, within PS417_00775at 174.502 kb on - strand, within PS417_00775at 174.657 kb on + strandat 174.757 kb on - strand, within PS417_00780at 174.757 kb on - strand, within PS417_00780at 174.770 kb on - strand, within PS417_00780at 174.864 kb on + strand, within PS417_00780at 174.864 kb on + strand, within PS417_00780at 174.864 kb on + strand, within PS417_00780at 174.865 kb on - strand, within PS417_00780at 174.865 kb on - strand, within PS417_00780at 174.865 kb on - strand, within PS417_00780at 174.961 kb on + strand, within PS417_00780at 175.026 kb on + strand, within PS417_00780at 175.200 kb on + strand, within PS417_00780at 175.201 kb on - strand, within PS417_00780at 175.201 kb on - strand, within PS417_00780at 175.322 kb on - strandat 175.360 kb on - strandat 175.360 kb on - strandat 175.397 kb on + strandat 175.425 kb on + strandat 175.425 kb on + strandat 175.426 kb on - strandat 175.506 kb on + strandat 175.506 kb on + strandat 175.556 kb on + strandat 175.603 kb on + strand, within PS417_00785at 175.603 kb on + strand, within PS417_00785at 175.604 kb on - strand, within PS417_00785at 175.606 kb on + strand, within PS417_00785at 175.606 kb on + strand, within PS417_00785at 175.606 kb on + strand, within PS417_00785at 175.607 kb on - strandat 175.607 kb on - strand, within PS417_00785at 175.607 kb on - strand, within PS417_00785at 175.819 kb on + strand, within PS417_00785at 175.819 kb on + strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.832 kb on + strand, within PS417_00785at 175.906 kb on + strand, within PS417_00785at 175.907 kb on - strand, within PS417_00785at 175.907 kb on - strand, within PS417_00785at 176.062 kb on + strand, within PS417_00785at 176.062 kb on + strand, within PS417_00785at 176.062 kb on + strand, within PS417_00785at 176.063 kb on - strandat 176.063 kb on - strandat 176.150 kb on + strandat 176.151 kb on - strandat 176.151 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
remove
173,672 + PS417_00770 0.88 -0.3
173,807 + +0.5
173,808 - -0.5
173,808 - +0.0
173,860 + +0.1
173,861 - +1.6
173,861 - -0.3
173,864 + -0.3
173,864 + -0.0
173,864 + -0.2
173,864 + +1.0
173,864 + +0.0
173,864 + +1.3
173,864 + -1.0
173,864 + -1.0
173,864 + -0.8
173,865 - -2.3
173,865 - -2.2
173,865 - +0.5
173,865 - -0.4
173,888 + +0.7
173,889 - -0.0
173,889 - -0.3
173,922 - +0.4
173,922 - -0.3
173,988 - -0.8
173,997 + +0.4
173,997 + +0.5
174,005 + +0.2
174,005 + -0.1
174,005 + -0.2
174,006 - +0.6
174,088 + +2.2
174,088 + -1.2
174,313 - PS417_00775 0.44 +3.5
174,313 - PS417_00775 0.44 -0.2
174,345 + PS417_00775 0.50 +1.7
174,345 + +1.5
174,345 + PS417_00775 0.50 -0.3
174,345 + PS417_00775 0.50 -1.2
174,345 + PS417_00775 0.50 -0.2
174,345 + PS417_00775 0.50 +0.4
174,346 - PS417_00775 0.50 -2.1
174,346 - PS417_00775 0.50 -0.6
174,346 - PS417_00775 0.50 +0.1
174,493 + PS417_00775 0.75 -0.3
174,494 - PS417_00775 0.75 +0.9
174,494 - PS417_00775 0.75 -0.7
174,494 - PS417_00775 0.75 +2.2
174,501 + PS417_00775 0.76 -0.5
174,501 + PS417_00775 0.76 -1.0
174,501 + PS417_00775 0.76 +1.2
174,501 + PS417_00775 0.76 -0.1
174,502 - PS417_00775 0.76 +0.0
174,502 - PS417_00775 0.76 +0.1
174,502 - PS417_00775 0.76 +0.0
174,657 + -0.9
174,757 - PS417_00780 0.17 +0.9
174,757 - PS417_00780 0.17 +0.3
174,770 - PS417_00780 0.19 +0.6
174,864 + PS417_00780 0.34 +1.1
174,864 + PS417_00780 0.34 -1.0
174,864 + PS417_00780 0.34 +0.8
174,865 - PS417_00780 0.34 +5.4
174,865 - PS417_00780 0.34 -1.1
174,865 - PS417_00780 0.34 +0.2
174,961 + PS417_00780 0.50 -0.3
175,026 + PS417_00780 0.60 +0.3
175,200 + PS417_00780 0.89 -0.1
175,201 - PS417_00780 0.89 -1.0
175,201 - PS417_00780 0.89 +0.8
175,322 - -2.0
175,360 - -1.2
175,360 - -0.2
175,397 + -1.0
175,425 + +0.9
175,425 + -0.4
175,426 - +0.1
175,506 + +0.4
175,506 + -0.4
175,556 + -1.2
175,603 + PS417_00785 0.11 +0.2
175,603 + PS417_00785 0.11 +0.4
175,604 - PS417_00785 0.11 -0.2
175,606 + PS417_00785 0.11 -2.0
175,606 + PS417_00785 0.11 -0.0
175,606 + PS417_00785 0.11 -0.1
175,607 - -0.5
175,607 - PS417_00785 0.12 -0.5
175,607 - PS417_00785 0.12 -0.5
175,819 + PS417_00785 0.48 -0.6
175,819 + PS417_00785 0.48 -0.4
175,820 - PS417_00785 0.48 +0.1
175,820 - PS417_00785 0.48 +1.6
175,820 - PS417_00785 0.48 +0.6
175,820 - PS417_00785 0.48 +0.0
175,832 + PS417_00785 0.50 +0.2
175,906 + PS417_00785 0.63 -0.7
175,907 - PS417_00785 0.63 +1.4
175,907 - PS417_00785 0.63 +0.7
176,062 + PS417_00785 0.90 +0.5
176,062 + PS417_00785 0.90 -0.1
176,062 + PS417_00785 0.90 +0.4
176,063 - -0.1
176,063 - +0.4
176,150 + +0.8
176,151 - -0.8
176,151 - +1.5

Or see this region's nucleotide sequence