Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26540 and PS417_26545 are separated by 38 nucleotides PS417_26545 and PS417_26550 are separated by 3 nucleotides PS417_26550 and PS417_26555 are separated by 25 nucleotides
PS417_26540: PS417_26540 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 5,740,174 to 5,741,580
_26540
PS417_26545: PS417_26545 - 16S rRNA methyltransferase, at 5,741,619 to 5,742,338
_26545
PS417_26550: PS417_26550 - ABC transporter, at 5,742,342 to 5,743,244
_26550
PS417_26555: PS417_26555 - endoribonuclease L-PSP, at 5,743,270 to 5,743,620
_26555
Position (kb) 5741
5742
5743 Strain fitness (log2 ratio) -2
-1
0
1 at 5740.619 kb on - strand, within PS417_26540 at 5740.678 kb on + strand, within PS417_26540 at 5740.678 kb on + strand, within PS417_26540 at 5740.679 kb on - strand, within PS417_26540 at 5740.710 kb on - strand, within PS417_26540 at 5740.770 kb on + strand, within PS417_26540 at 5740.771 kb on - strand, within PS417_26540 at 5740.871 kb on - strand, within PS417_26540 at 5740.871 kb on - strand, within PS417_26540 at 5740.882 kb on + strand, within PS417_26540 at 5740.882 kb on + strand, within PS417_26540 at 5740.882 kb on + strand, within PS417_26540 at 5740.882 kb on + strand, within PS417_26540 at 5740.949 kb on + strand, within PS417_26540 at 5741.080 kb on + strand, within PS417_26540 at 5741.080 kb on + strand, within PS417_26540 at 5741.093 kb on - strand, within PS417_26540 at 5741.138 kb on - strand, within PS417_26540 at 5741.434 kb on + strand, within PS417_26540 at 5741.434 kb on + strand, within PS417_26540 at 5741.435 kb on - strand, within PS417_26540 at 5741.449 kb on + strand at 5741.597 kb on + strand at 5741.598 kb on - strand at 5741.694 kb on + strand, within PS417_26545 at 5741.694 kb on + strand at 5741.694 kb on + strand, within PS417_26545 at 5742.271 kb on + strand at 5742.337 kb on - strand at 5742.643 kb on + strand, within PS417_26550 at 5742.861 kb on - strand, within PS417_26550 at 5742.982 kb on + strand, within PS417_26550 at 5742.993 kb on - strand at 5743.058 kb on - strand, within PS417_26550 at 5743.091 kb on - strand, within PS417_26550 at 5743.127 kb on + strand, within PS417_26550 at 5743.248 kb on + strand at 5743.275 kb on + strand at 5743.275 kb on + strand at 5743.276 kb on - strand at 5743.276 kb on - strand at 5743.306 kb on + strand, within PS417_26555 at 5743.307 kb on - strand, within PS417_26555 at 5743.307 kb on - strand, within PS417_26555 at 5743.307 kb on - strand, within PS417_26555
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 5,740,619 - PS417_26540 0.32 +0.7 5,740,678 + PS417_26540 0.36 -0.7 5,740,678 + PS417_26540 0.36 -1.7 5,740,679 - PS417_26540 0.36 -0.5 5,740,710 - PS417_26540 0.38 +0.5 5,740,770 + PS417_26540 0.42 -0.4 5,740,771 - PS417_26540 0.42 -0.1 5,740,871 - PS417_26540 0.50 +0.5 5,740,871 - PS417_26540 0.50 -1.0 5,740,882 + PS417_26540 0.50 +1.2 5,740,882 + PS417_26540 0.50 -2.4 5,740,882 + PS417_26540 0.50 -1.3 5,740,882 + PS417_26540 0.50 -0.5 5,740,949 + PS417_26540 0.55 +1.1 5,741,080 + PS417_26540 0.64 -2.2 5,741,080 + PS417_26540 0.64 -0.1 5,741,093 - PS417_26540 0.65 -0.0 5,741,138 - PS417_26540 0.69 -0.0 5,741,434 + PS417_26540 0.90 -0.9 5,741,434 + PS417_26540 0.90 +0.7 5,741,435 - PS417_26540 0.90 -2.0 5,741,449 + -1.4 5,741,597 + -0.2 5,741,598 - -0.5 5,741,694 + PS417_26545 0.10 -1.1 5,741,694 + -0.8 5,741,694 + PS417_26545 0.10 -0.8 5,742,271 + -0.8 5,742,337 - -1.8 5,742,643 + PS417_26550 0.33 -1.7 5,742,861 - PS417_26550 0.57 -2.7 5,742,982 + PS417_26550 0.71 +0.1 5,742,993 - -0.5 5,743,058 - PS417_26550 0.79 -1.4 5,743,091 - PS417_26550 0.83 +0.0 5,743,127 + PS417_26550 0.87 +0.1 5,743,248 + -0.7 5,743,275 + -0.2 5,743,275 + -0.1 5,743,276 - -0.3 5,743,276 - +0.2 5,743,306 + PS417_26555 0.10 -1.6 5,743,307 - PS417_26555 0.11 +0.8 5,743,307 - PS417_26555 0.11 +0.2 5,743,307 - PS417_26555 0.11 +0.1
Or see this region's nucleotide sequence