Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02475 and PS417_02480 overlap by 1 nucleotides PS417_02480 and PS417_02485 overlap by 1 nucleotides
PS417_02475: PS417_02475 - N-acetylmuramoyl-L-alanine amidase, at 565,078 to 566,499
_02475
PS417_02480: PS417_02480 - DNA mismatch repair protein, at 566,499 to 568,415
_02480
PS417_02485: PS417_02485 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 568,415 to 569,386
_02485
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 566.296 kb on + strand, within PS417_02475 at 566.296 kb on + strand, within PS417_02475 at 566.296 kb on + strand at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.409 kb on + strand at 567.285 kb on + strand, within PS417_02480 at 567.285 kb on + strand, within PS417_02480 at 567.660 kb on + strand, within PS417_02480 at 567.661 kb on - strand, within PS417_02480 at 567.700 kb on - strand, within PS417_02480 at 567.705 kb on + strand, within PS417_02480 at 567.706 kb on - strand, within PS417_02480 at 567.830 kb on + strand, within PS417_02480 at 567.873 kb on + strand, within PS417_02480 at 567.874 kb on - strand, within PS417_02480 at 567.874 kb on - strand, within PS417_02480 at 568.171 kb on + strand, within PS417_02480 at 568.700 kb on - strand, within PS417_02485 at 568.731 kb on - strand, within PS417_02485 at 569.016 kb on - strand, within PS417_02485 at 569.018 kb on - strand, within PS417_02485 at 569.092 kb on + strand, within PS417_02485 at 569.093 kb on - strand, within PS417_02485 at 569.124 kb on + strand, within PS417_02485 at 569.179 kb on - strand, within PS417_02485
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 566,296 + PS417_02475 0.86 +1.5 566,296 + PS417_02475 0.86 -1.9 566,296 + -0.5 566,297 - PS417_02475 0.86 +0.2 566,297 - PS417_02475 0.86 -1.8 566,297 - PS417_02475 0.86 -0.2 566,297 - PS417_02475 0.86 -0.3 566,409 + -0.8 567,285 + PS417_02480 0.41 +0.0 567,285 + PS417_02480 0.41 -1.3 567,660 + PS417_02480 0.61 -0.0 567,661 - PS417_02480 0.61 -1.8 567,700 - PS417_02480 0.63 -1.4 567,705 + PS417_02480 0.63 -0.6 567,706 - PS417_02480 0.63 -2.1 567,830 + PS417_02480 0.69 -0.2 567,873 + PS417_02480 0.72 -1.1 567,874 - PS417_02480 0.72 -2.8 567,874 - PS417_02480 0.72 -3.3 568,171 + PS417_02480 0.87 -0.9 568,700 - PS417_02485 0.29 -2.9 568,731 - PS417_02485 0.33 -2.2 569,016 - PS417_02485 0.62 -1.1 569,018 - PS417_02485 0.62 -2.1 569,092 + PS417_02485 0.70 -2.6 569,093 - PS417_02485 0.70 -3.8 569,124 + PS417_02485 0.73 -3.0 569,179 - PS417_02485 0.79 -0.8
Or see this region's nucleotide sequence