Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24745 and PS417_24750 are separated by 174 nucleotides PS417_24750 and PS417_24755 are separated by 145 nucleotides
PS417_24745: PS417_24745 - gamma-glutamyl phosphate reductase, at 5,367,807 to 5,369,072
_24745
PS417_24750: PS417_24750 - 3-methyladenine DNA glycosylase, at 5,369,247 to 5,369,930
_24750
PS417_24755: PS417_24755 - phosphoesterase, at 5,370,076 to 5,371,392
_24755
Position (kb) 5369
5370 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5368.370 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.501 kb on - strand, within PS417_24745 at 5369.110 kb on - strand at 5369.110 kb on - strand at 5369.110 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.168 kb on - strand at 5369.193 kb on - strand at 5369.208 kb on - strand at 5369.224 kb on + strand at 5369.225 kb on - strand at 5369.403 kb on + strand, within PS417_24750 at 5369.407 kb on - strand, within PS417_24750 at 5369.407 kb on - strand, within PS417_24750 at 5369.443 kb on - strand, within PS417_24750 at 5369.483 kb on + strand, within PS417_24750 at 5369.484 kb on - strand, within PS417_24750 at 5369.484 kb on - strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.493 kb on + strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.496 kb on + strand, within PS417_24750 at 5369.497 kb on - strand, within PS417_24750 at 5369.751 kb on + strand, within PS417_24750 at 5369.751 kb on + strand, within PS417_24750 at 5369.752 kb on - strand, within PS417_24750 at 5369.752 kb on - strand, within PS417_24750 at 5369.932 kb on - strand at 5369.935 kb on + strand at 5369.935 kb on + strand at 5369.936 kb on - strand at 5369.936 kb on - strand at 5369.936 kb on - strand at 5369.936 kb on - strand at 5369.936 kb on - strand at 5370.076 kb on - strand at 5370.076 kb on - strand at 5370.307 kb on + strand, within PS417_24755 at 5370.307 kb on + strand, within PS417_24755 at 5370.307 kb on + strand, within PS417_24755 at 5370.308 kb on - strand, within PS417_24755 at 5370.308 kb on - strand, within PS417_24755 at 5370.395 kb on - strand, within PS417_24755 at 5370.395 kb on - strand, within PS417_24755 at 5370.406 kb on + strand, within PS417_24755 at 5370.407 kb on - strand, within PS417_24755 at 5370.456 kb on + strand, within PS417_24755 at 5370.547 kb on + strand, within PS417_24755 at 5370.548 kb on - strand, within PS417_24755 at 5370.698 kb on + strand, within PS417_24755 at 5370.741 kb on + strand, within PS417_24755 at 5370.899 kb on + strand, within PS417_24755 at 5370.900 kb on - strand, within PS417_24755
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 5,368,370 - PS417_24745 0.44 -0.5 5,368,370 - PS417_24745 0.44 -2.2 5,368,370 - PS417_24745 0.44 -1.7 5,368,501 - PS417_24745 0.55 -1.5 5,369,110 - -1.0 5,369,110 - +1.9 5,369,110 - -0.2 5,369,112 - -0.6 5,369,112 - +0.4 5,369,112 - -1.8 5,369,112 - +1.3 5,369,112 - -0.4 5,369,168 - -0.0 5,369,193 - -0.1 5,369,208 - +0.2 5,369,224 + +0.1 5,369,225 - +0.5 5,369,403 + PS417_24750 0.23 +1.5 5,369,407 - PS417_24750 0.23 -0.2 5,369,407 - PS417_24750 0.23 -0.8 5,369,443 - PS417_24750 0.29 +0.0 5,369,483 + PS417_24750 0.35 -0.4 5,369,484 - PS417_24750 0.35 -0.1 5,369,484 - PS417_24750 0.35 +0.2 5,369,487 + PS417_24750 0.35 -0.3 5,369,487 + PS417_24750 0.35 -0.5 5,369,487 + PS417_24750 0.35 +0.5 5,369,487 + PS417_24750 0.35 +0.2 5,369,488 - PS417_24750 0.35 +0.1 5,369,488 - PS417_24750 0.35 +0.3 5,369,488 - PS417_24750 0.35 -1.1 5,369,488 - PS417_24750 0.35 +0.0 5,369,488 - PS417_24750 0.35 -0.6 5,369,488 - PS417_24750 0.35 +0.2 5,369,488 - PS417_24750 0.35 +0.4 5,369,488 - PS417_24750 0.35 -0.1 5,369,493 + PS417_24750 0.36 +0.5 5,369,494 - PS417_24750 0.36 +0.3 5,369,494 - PS417_24750 0.36 -0.2 5,369,494 - PS417_24750 0.36 -0.4 5,369,494 - PS417_24750 0.36 +0.5 5,369,496 + PS417_24750 0.36 +1.0 5,369,497 - PS417_24750 0.37 -0.7 5,369,751 + PS417_24750 0.74 -0.9 5,369,751 + PS417_24750 0.74 +0.2 5,369,752 - PS417_24750 0.74 +0.0 5,369,752 - PS417_24750 0.74 +0.2 5,369,932 - -1.7 5,369,935 + -0.2 5,369,935 + +1.5 5,369,936 - +0.5 5,369,936 - -1.1 5,369,936 - -2.0 5,369,936 - -0.7 5,369,936 - -0.1 5,370,076 - -0.1 5,370,076 - -0.8 5,370,307 + PS417_24755 0.18 +0.6 5,370,307 + PS417_24755 0.18 +1.6 5,370,307 + PS417_24755 0.18 -0.2 5,370,308 - PS417_24755 0.18 -0.1 5,370,308 - PS417_24755 0.18 -0.3 5,370,395 - PS417_24755 0.24 -0.6 5,370,395 - PS417_24755 0.24 -1.2 5,370,406 + PS417_24755 0.25 -0.8 5,370,407 - PS417_24755 0.25 -0.4 5,370,456 + PS417_24755 0.29 -0.6 5,370,547 + PS417_24755 0.36 +0.5 5,370,548 - PS417_24755 0.36 +1.1 5,370,698 + PS417_24755 0.47 +0.2 5,370,741 + PS417_24755 0.50 -0.8 5,370,899 + PS417_24755 0.62 -0.3 5,370,900 - PS417_24755 0.63 -0.4
Or see this region's nucleotide sequence