Strain Fitness in Pseudomonas simiae WCS417 around PS417_20865

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_20860 and PS417_20865 are separated by 176 nucleotidesPS417_20865 and PS417_20870 are separated by 87 nucleotides PS417_20860: PS417_20860 - DNA polymerase III subunit gamma/tau, at 4,529,876 to 4,531,039 _20860 PS417_20865: PS417_20865 - NAD-dependent DNA ligase LigA, at 4,531,216 to 4,533,573 _20865 PS417_20870: PS417_20870 - cell division protein ZipA, at 4,533,661 to 4,534,524 _20870 Position (kb) 4531 4532 4533 4534Strain fitness (log2 ratio) -2 -1 0 1at 4530.283 kb on - strand, within PS417_20860at 4530.306 kb on + strand, within PS417_20860at 4530.306 kb on + strand, within PS417_20860at 4530.382 kb on - strand, within PS417_20860at 4530.385 kb on - strand, within PS417_20860at 4533.618 kb on - strandat 4533.618 kb on - strandat 4533.618 kb on - strandat 4533.618 kb on - strandat 4533.618 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
remove
4,530,283 - PS417_20860 0.35 -0.2
4,530,306 + PS417_20860 0.37 -0.3
4,530,306 + PS417_20860 0.37 +0.2
4,530,382 - PS417_20860 0.43 +0.5
4,530,385 - PS417_20860 0.44 -0.1
4,533,618 - -0.8
4,533,618 - -2.3
4,533,618 - -0.7
4,533,618 - -0.4
4,533,618 - -2.5

Or see this region's nucleotide sequence