Strain Fitness in Pseudomonas simiae WCS417 around PS417_20700

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,499,240	+				+0.1
4,499,446	+				+0.4
4,499,507	+				+0.3
4,499,587	+		PS417_20695	0.20	-0.1
4,499,588	-		PS417_20695	0.21	-0.6
4,499,588	-		PS417_20695	0.21	-0.7
4,499,588	-		PS417_20695	0.21	+0.1
4,499,588	-		PS417_20695	0.21	-0.2
4,499,704	+		PS417_20695	0.37	-0.5
4,499,705	-		PS417_20695	0.38	-1.8
4,499,705	-		PS417_20695	0.38	-2.3
4,499,914	+		PS417_20695	0.68	+0.2
4,499,914	+		PS417_20695	0.68	+0.7
4,500,162	+				-2.0
4,500,226	-				+2.6
4,500,231	-				-0.8
4,500,231	-				-1.5
4,500,234	+				+0.8
4,500,241	+				-2.6
4,500,241	+				-2.1
4,500,242	-				-3.4
4,500,242	-				-2.3
4,500,242	-				-0.8
4,500,242	-				-1.6
4,500,243	+				+0.7
4,500,243	+				-1.4
4,500,243	+				-0.0
4,500,243	+				-1.0
4,500,243	+				-0.9
4,500,243	+				+0.4
4,500,244	-				+0.6
4,500,244	-				-2.3
4,500,247	+				-1.0
4,500,247	+				-0.9
4,500,247	+				-0.3
4,500,247	+				-2.8
4,500,248	-				-1.0
4,500,248	-				+2.6
4,500,248	-				-3.3
4,500,273	+				-2.6
4,500,273	+				-1.0
4,500,435	-		PS417_20700	0.15	+1.1
4,500,688	+		PS417_20700	0.33	-1.8
4,500,689	-		PS417_20700	0.33	-2.1
4,500,689	-		PS417_20700	0.33	-0.9
4,500,689	-		PS417_20700	0.33	-1.7
4,500,689	-		PS417_20700	0.33	-1.9
4,500,689	-		PS417_20700	0.33	-2.8
4,500,838	-		PS417_20700	0.44	-0.4
4,500,883	+		PS417_20700	0.47	-0.7
4,500,883	+		PS417_20700	0.47	-0.2
4,500,884	-		PS417_20700	0.47	-0.6
4,500,884	-		PS417_20700	0.47	-1.7
4,500,884	-		PS417_20700	0.47	-0.3
4,500,884	-		PS417_20700	0.47	+0.6
4,500,884	-		PS417_20700	0.47	+0.2
4,500,884	-		PS417_20700	0.47	-0.9
4,500,886	+		PS417_20700	0.47	+0.6
4,500,886	+		PS417_20700	0.47	-0.4
4,500,887	-		PS417_20700	0.47	-1.6
4,500,887	-		PS417_20700	0.47	-1.4
4,500,887	-		PS417_20700	0.47	+0.1
4,500,919	+		PS417_20700	0.49	-2.6
4,500,919	+		PS417_20700	0.49	-3.1
4,500,919	+		PS417_20700	0.49	+1.2
4,500,919	+		PS417_20700	0.49	-1.4
4,500,920	-		PS417_20700	0.49	-1.4
4,500,920	-		PS417_20700	0.49	-0.0
4,500,920	-		PS417_20700	0.49	-1.6
4,500,926	-		PS417_20700	0.50	-1.0
4,500,967	+		PS417_20700	0.53	+0.3
4,500,967	+		PS417_20700	0.53	-0.6
4,501,165	+		PS417_20700	0.67	-2.3
4,501,166	-		PS417_20700	0.67	-0.0
4,501,166	-		PS417_20700	0.67	-1.9
4,501,342	+		PS417_20700	0.79	+1.6
4,501,342	+		PS417_20700	0.79	-1.9
4,501,342	+		PS417_20700	0.79	-1.7
4,501,477	+		PS417_20700	0.88	-1.3
4,501,826	+		PS417_20705	0.29	-1.6
4,501,827	-		PS417_20705	0.29	-0.4
4,501,827	-		PS417_20705	0.29	-2.2
4,501,827	-		PS417_20705	0.29	-0.0
4,501,845	+		PS417_20705	0.32	-0.4
4,502,148	-		PS417_20705	0.81	-0.1
4,502,220	-				-2.7
4,502,446	-				-1.7
4,502,478	+				-3.6
4,502,478	+				-1.7
4,502,478	+				-0.5
4,502,478	+				-2.0
4,502,478	+				-0.4
4,502,479	-				-1.9
4,502,492	+				-0.4
4,502,609	-		PS417_20715	0.16	-1.4
4,502,609	-		PS417_20715	0.16	+0.6
4,502,609	-		PS417_20715	0.16	-0.7