Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20015 and PS417_20020 are separated by 42 nucleotides PS417_20020 and PS417_20025 are separated by 2 nucleotides PS417_20025 and PS417_20030 overlap by 4 nucleotides
PS417_20015: PS417_20015 - MarR family transcriptional regulator, at 4,345,572 to 4,345,976
_20015
PS417_20020: PS417_20020 - cobalamin synthase, at 4,346,019 to 4,346,747
_20020
PS417_20025: PS417_20025 - alpha-ribazole phosphatase, at 4,346,750 to 4,347,325
_20025
PS417_20030: PS417_20030 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,347,322 to 4,348,377
_20030
Position (kb) 4346
4347
4348 Strain fitness (log2 ratio) -1
0
1
2 at 4345.985 kb on + strand at 4345.986 kb on - strand at 4345.986 kb on - strand at 4345.986 kb on - strand at 4345.988 kb on - strand at 4346.127 kb on + strand, within PS417_20020 at 4346.128 kb on - strand, within PS417_20020 at 4346.128 kb on - strand, within PS417_20020 at 4346.128 kb on - strand, within PS417_20020 at 4346.274 kb on + strand, within PS417_20020 at 4346.274 kb on + strand, within PS417_20020 at 4346.274 kb on + strand, within PS417_20020 at 4346.274 kb on + strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.278 kb on + strand, within PS417_20020 at 4346.278 kb on + strand, within PS417_20020 at 4346.279 kb on - strand, within PS417_20020 at 4346.289 kb on - strand, within PS417_20020 at 4346.864 kb on + strand, within PS417_20025 at 4346.917 kb on - strand, within PS417_20025 at 4347.582 kb on + strand, within PS417_20030 at 4347.583 kb on - strand, within PS417_20030 at 4347.583 kb on - strand, within PS417_20030 at 4347.709 kb on + strand, within PS417_20030
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 4,345,985 + -0.8 4,345,986 - -1.6 4,345,986 - +1.5 4,345,986 - +0.3 4,345,988 - +0.4 4,346,127 + PS417_20020 0.15 -0.9 4,346,128 - PS417_20020 0.15 +0.3 4,346,128 - PS417_20020 0.15 -0.4 4,346,128 - PS417_20020 0.15 +0.2 4,346,274 + PS417_20020 0.35 -1.3 4,346,274 + PS417_20020 0.35 -0.3 4,346,274 + PS417_20020 0.35 -0.3 4,346,274 + PS417_20020 0.35 -0.2 4,346,275 - PS417_20020 0.35 +0.0 4,346,275 - PS417_20020 0.35 -0.2 4,346,275 - PS417_20020 0.35 -0.9 4,346,275 - PS417_20020 0.35 -0.2 4,346,275 - PS417_20020 0.35 +0.8 4,346,275 - PS417_20020 0.35 -0.4 4,346,278 + PS417_20020 0.36 -0.9 4,346,278 + PS417_20020 0.36 -0.0 4,346,279 - PS417_20020 0.36 -0.3 4,346,289 - PS417_20020 0.37 -0.2 4,346,864 + PS417_20025 0.20 -0.5 4,346,917 - PS417_20025 0.29 -1.2 4,347,582 + PS417_20030 0.25 +0.3 4,347,583 - PS417_20030 0.25 +2.0 4,347,583 - PS417_20030 0.25 +0.0 4,347,709 + PS417_20030 0.37 -0.2
Or see this region's nucleotide sequence