Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15040 and PS417_15045 are separated by 84 nucleotides PS417_15045 and PS417_15050 are separated by 3 nucleotides PS417_15050 and PS417_15055 are separated by 232 nucleotides
PS417_15040: PS417_15040 - DNA-binding protein, at 3,286,964 to 3,288,397
_15040
PS417_15045: PS417_15045 - cupin, at 3,288,482 to 3,288,883
_15045
PS417_15050: PS417_15050 - 3-methyladenine DNA glycosylase, at 3,288,887 to 3,289,516
_15050
PS417_15055: PS417_15055 - C4-dicarboxylate ABC transporter, at 3,289,749 to 3,291,059
_15055
Position (kb)
3288
3289
3290 Strain fitness (log2 ratio)
-2
-1
0
1 at 3288.079 kb on + strand, within PS417_15040 at 3288.080 kb on - strand, within PS417_15040 at 3288.101 kb on + strand, within PS417_15040 at 3288.102 kb on - strand, within PS417_15040 at 3288.301 kb on - strand at 3288.301 kb on - strand at 3288.396 kb on - strand at 3288.617 kb on - strand, within PS417_15045 at 3288.686 kb on + strand, within PS417_15045 at 3288.687 kb on - strand, within PS417_15045 at 3288.687 kb on - strand, within PS417_15045 at 3288.761 kb on + strand, within PS417_15045 at 3288.762 kb on - strand, within PS417_15045 at 3288.987 kb on + strand, within PS417_15050 at 3288.987 kb on + strand, within PS417_15050 at 3288.987 kb on + strand, within PS417_15050 at 3288.987 kb on + strand, within PS417_15050 at 3289.008 kb on + strand, within PS417_15050 at 3289.008 kb on + strand, within PS417_15050 at 3289.008 kb on + strand, within PS417_15050 at 3289.009 kb on - strand, within PS417_15050 at 3289.009 kb on - strand, within PS417_15050 at 3289.081 kb on - strand, within PS417_15050 at 3289.397 kb on - strand, within PS417_15050 at 3289.633 kb on + strand at 3289.634 kb on - strand at 3289.665 kb on - strand at 3289.665 kb on - strand at 3289.665 kb on - strand at 3289.707 kb on + strand at 3289.708 kb on - strand at 3289.754 kb on + strand at 3289.754 kb on + strand at 3289.754 kb on + strand at 3289.754 kb on + strand at 3289.754 kb on + strand at 3289.754 kb on + strand at 3289.755 kb on - strand at 3289.755 kb on - strand at 3289.755 kb on - strand at 3289.986 kb on + strand, within PS417_15055 at 3289.986 kb on + strand, within PS417_15055 at 3289.986 kb on + strand, within PS417_15055 at 3289.987 kb on - strand, within PS417_15055 at 3289.987 kb on - strand, within PS417_15055 at 3290.067 kb on - strand, within PS417_15055 at 3290.382 kb on + strand, within PS417_15055 at 3290.515 kb on - strand, within PS417_15055
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 3,288,079 + PS417_15040 0.78 -0.8 3,288,080 - PS417_15040 0.78 -0.0 3,288,101 + PS417_15040 0.79 +1.4 3,288,102 - PS417_15040 0.79 +0.5 3,288,301 - +0.9 3,288,301 - +0.0 3,288,396 - +0.2 3,288,617 - PS417_15045 0.34 +0.1 3,288,686 + PS417_15045 0.51 +1.2 3,288,687 - PS417_15045 0.51 -1.6 3,288,687 - PS417_15045 0.51 +0.6 3,288,761 + PS417_15045 0.69 -0.6 3,288,762 - PS417_15045 0.70 -0.7 3,288,987 + PS417_15050 0.16 -0.1 3,288,987 + PS417_15050 0.16 +0.7 3,288,987 + PS417_15050 0.16 -0.8 3,288,987 + PS417_15050 0.16 +0.3 3,289,008 + PS417_15050 0.19 -0.7 3,289,008 + PS417_15050 0.19 -1.0 3,289,008 + PS417_15050 0.19 -0.0 3,289,009 - PS417_15050 0.19 +1.3 3,289,009 - PS417_15050 0.19 +0.8 3,289,081 - PS417_15050 0.31 -0.5 3,289,397 - PS417_15050 0.81 -0.3 3,289,633 + -0.0 3,289,634 - +0.7 3,289,665 - +0.6 3,289,665 - -0.3 3,289,665 - +0.1 3,289,707 + -0.1 3,289,708 - -2.4 3,289,754 + +0.6 3,289,754 + +1.2 3,289,754 + -0.2 3,289,754 + -1.0 3,289,754 + +1.2 3,289,754 + -0.4 3,289,755 - -0.9 3,289,755 - +1.3 3,289,755 - -1.1 3,289,986 + PS417_15055 0.18 -0.1 3,289,986 + PS417_15055 0.18 -0.6 3,289,986 + PS417_15055 0.18 +0.4 3,289,987 - PS417_15055 0.18 -0.3 3,289,987 - PS417_15055 0.18 -0.5 3,290,067 - PS417_15055 0.24 -1.9 3,290,382 + PS417_15055 0.48 -1.0 3,290,515 - PS417_15055 0.58 +0.5
Or see this region's nucleotide sequence