Strain Fitness in Pseudomonas simiae WCS417 around PS417_01480

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01475 and PS417_01480 are separated by 240 nucleotidesPS417_01480 and PS417_01485 overlap by 20 nucleotidesPS417_01485 and PS417_01490 are separated by 38 nucleotides PS417_01475: PS417_01475 - cell division protein FtsQ, at 327,786 to 328,706 _01475 PS417_01480: PS417_01480 - SAM-dependent methyltransferase, at 328,947 to 330,134 _01480 PS417_01485: PS417_01485 - ABC transporter permease, at 330,115 to 330,804 _01485 PS417_01490: PS417_01490 - ABC transporter permease, at 330,843 to 331,538 _01490 Position (kb) 328 329 330 331Strain fitness (log2 ratio) -2 -1 0 1 2at 328.307 kb on + strand, within PS417_01475at 328.375 kb on + strand, within PS417_01475at 328.375 kb on + strand, within PS417_01475at 328.566 kb on + strand, within PS417_01475at 328.567 kb on - strand, within PS417_01475at 328.567 kb on - strand, within PS417_01475at 328.698 kb on + strandat 328.705 kb on - strandat 328.717 kb on - strandat 328.718 kb on + strandat 328.738 kb on + strandat 328.738 kb on + strandat 328.738 kb on + strandat 328.739 kb on - strandat 328.739 kb on - strandat 328.870 kb on + strandat 328.871 kb on - strandat 328.871 kb on - strandat 329.010 kb on + strandat 329.011 kb on - strandat 329.140 kb on + strand, within PS417_01480at 329.209 kb on + strandat 329.264 kb on - strand, within PS417_01480at 329.467 kb on + strand, within PS417_01480at 329.468 kb on - strand, within PS417_01480at 329.468 kb on - strand, within PS417_01480at 329.468 kb on - strand, within PS417_01480at 329.677 kb on + strand, within PS417_01480at 329.709 kb on + strand, within PS417_01480at 329.710 kb on - strand, within PS417_01480at 329.879 kb on + strand, within PS417_01480at 329.879 kb on + strand, within PS417_01480at 330.033 kb on + strandat 330.033 kb on + strandat 330.172 kb on + strandat 330.182 kb on + strandat 330.182 kb on + strandat 330.198 kb on - strand, within PS417_01485at 330.198 kb on - strand, within PS417_01485at 330.236 kb on + strand, within PS417_01485at 330.241 kb on - strand, within PS417_01485at 330.380 kb on + strand, within PS417_01485at 330.380 kb on + strand, within PS417_01485at 330.380 kb on + strand, within PS417_01485at 330.381 kb on - strand, within PS417_01485at 330.381 kb on - strand, within PS417_01485at 330.480 kb on - strand, within PS417_01485at 330.584 kb on + strand, within PS417_01485at 330.588 kb on - strand, within PS417_01485at 330.639 kb on - strand, within PS417_01485at 330.644 kb on + strand, within PS417_01485at 330.645 kb on - strand, within PS417_01485at 330.662 kb on + strand, within PS417_01485at 330.663 kb on - strand, within PS417_01485at 330.663 kb on - strand, within PS417_01485at 330.833 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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328,307 + PS417_01475 0.57 +0.4
328,375 + PS417_01475 0.64 -1.2
328,375 + PS417_01475 0.64 +0.1
328,566 + PS417_01475 0.85 +0.2
328,567 - PS417_01475 0.85 +0.1
328,567 - PS417_01475 0.85 -0.6
328,698 + -0.9
328,705 - +0.2
328,717 - +1.4
328,718 + +0.7
328,738 + +0.1
328,738 + -0.7
328,738 + -0.3
328,739 - -0.0
328,739 - -0.3
328,870 + -0.2
328,871 - +0.4
328,871 - -0.0
329,010 + +0.7
329,011 - -1.0
329,140 + PS417_01480 0.16 -0.9
329,209 + +2.0
329,264 - PS417_01480 0.27 -0.9
329,467 + PS417_01480 0.44 -1.2
329,468 - PS417_01480 0.44 -0.2
329,468 - PS417_01480 0.44 -2.0
329,468 - PS417_01480 0.44 -0.5
329,677 + PS417_01480 0.61 -2.0
329,709 + PS417_01480 0.64 -0.2
329,710 - PS417_01480 0.64 -1.4
329,879 + PS417_01480 0.78 +0.1
329,879 + PS417_01480 0.78 +0.4
330,033 + +0.2
330,033 + +0.6
330,172 + -0.6
330,182 + +0.4
330,182 + +0.6
330,198 - PS417_01485 0.12 -0.6
330,198 - PS417_01485 0.12 +0.3
330,236 + PS417_01485 0.18 -0.9
330,241 - PS417_01485 0.18 +0.2
330,380 + PS417_01485 0.38 +1.4
330,380 + PS417_01485 0.38 +1.4
330,380 + PS417_01485 0.38 +0.1
330,381 - PS417_01485 0.39 -0.2
330,381 - PS417_01485 0.39 -0.2
330,480 - PS417_01485 0.53 +0.2
330,584 + PS417_01485 0.68 +0.6
330,588 - PS417_01485 0.69 +0.1
330,639 - PS417_01485 0.76 -0.1
330,644 + PS417_01485 0.77 -0.9
330,645 - PS417_01485 0.77 +0.1
330,662 + PS417_01485 0.79 -1.6
330,663 - PS417_01485 0.79 +0.9
330,663 - PS417_01485 0.79 -0.5
330,833 + -1.2

Or see this region's nucleotide sequence