Strain Fitness in Pseudomonas simiae WCS417 around PS417_14050
Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Polymyxin B sulfate 0.002 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,085,030 | - | -0.0 | |||
3,085,048 | + | +0.3 | |||
3,085,048 | + | -0.0 | |||
3,085,049 | - | +0.2 | |||
3,085,067 | - | -0.5 | |||
3,085,094 | - | +0.2 | |||
3,085,156 | - | -0.5 | |||
3,085,232 | + | -0.3 | |||
3,085,233 | - | +1.1 | |||
3,085,289 | - | PS417_14045 | 0.17 | -0.7 | |
3,085,289 | - | PS417_14045 | 0.17 | +0.9 | |
3,085,394 | + | PS417_14045 | 0.35 | +0.6 | |
3,085,477 | + | -0.5 | |||
3,085,478 | - | PS417_14045 | 0.50 | -1.5 | |
3,085,585 | + | PS417_14045 | 0.69 | -0.2 | |
3,085,585 | + | PS417_14045 | 0.69 | -1.3 | |
3,085,643 | - | PS417_14045 | 0.80 | -1.5 | |
3,085,693 | - | PS417_14045 | 0.88 | -0.6 | |
3,085,711 | + | -0.6 | |||
3,085,734 | + | -0.3 | |||
3,085,781 | + | +0.4 | |||
3,085,782 | - | -0.7 | |||
3,085,791 | + | -0.1 | |||
3,085,888 | - | +0.7 | |||
3,085,992 | + | -0.6 | |||
3,086,070 | + | PS417_14050 | 0.18 | -0.8 | |
3,086,268 | + | PS417_14050 | 0.40 | -1.6 | |
3,086,269 | - | PS417_14050 | 0.40 | -0.3 | |
3,086,876 | + | +0.1 | |||
3,086,877 | - | +0.2 | |||
3,086,891 | + | +1.5 | |||
3,086,891 | + | -0.3 | |||
3,086,963 | - | -0.1 | |||
3,087,087 | - | -0.3 | |||
3,087,087 | - | +0.4 | |||
3,087,743 | + | +0.7 |
Or see this region's nucleotide sequence