Strain Fitness in Pseudomonas simiae WCS417 around PS417_09975

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,148,607	+		PS417_09965	0.73	-0.7
2,148,608	-		PS417_09965	0.73	-0.2
2,148,653	+				-2.1
2,148,654	-		PS417_09965	0.78	-0.2
2,148,654	-		PS417_09965	0.78	+0.1
2,148,731	-		PS417_09965	0.86	-0.7
2,148,752	+		PS417_09965	0.89	+0.3
2,148,753	-		PS417_09965	0.89	-0.7
2,148,753	-		PS417_09965	0.89	-0.4
2,148,799	+				-0.9
2,148,799	+				-1.4
2,148,856	+				-0.1
2,148,856	+				+0.3
2,148,856	+				+0.2
2,148,857	-				+0.0
2,148,857	-				-0.2
2,148,857	-				-0.8
2,148,859	-				-0.2
2,148,859	-				-0.4
2,148,907	+		PS417_09970	0.12	-0.3
2,148,908	-		PS417_09970	0.12	-0.8
2,148,908	-		PS417_09970	0.12	+0.1
2,148,912	+		PS417_09970	0.13	+0.1
2,148,912	+		PS417_09970	0.13	-0.1
2,148,913	-		PS417_09970	0.13	-0.1
2,148,923	+		PS417_09970	0.15	+0.4
2,148,969	-		PS417_09970	0.25	+0.8
2,148,976	+		PS417_09970	0.27	+0.1
2,148,976	+				+1.6
2,148,977	-		PS417_09970	0.27	-0.3
2,148,984	-		PS417_09970	0.28	-1.6
2,149,069	-		PS417_09970	0.47	+0.2
2,149,069	-		PS417_09970	0.47	+0.4
2,149,198	+		PS417_09970	0.75	+0.4
2,149,198	+		PS417_09970	0.75	-0.9
2,149,199	-		PS417_09970	0.75	-0.8
2,149,199	-		PS417_09970	0.75	+1.2
2,149,204	+		PS417_09970	0.76	-0.4
2,149,204	+		PS417_09970	0.76	-0.2
2,149,248	-		PS417_09970	0.85	+0.4
2,149,286	-				-0.3
2,149,340	+				-0.3
2,149,340	+				+0.6
2,149,340	+				-1.3
2,149,341	-				-0.2
2,149,341	-				-0.6
2,149,341	-				-0.4
2,149,341	-				-1.6
2,149,341	-				+0.3
2,149,342	+				-0.7
2,149,354	+				-1.3
2,149,501	-				-1.7
2,149,635	+		PS417_09975	0.16	-2.3
2,149,655	+		PS417_09975	0.23	-1.5
2,149,655	+		PS417_09975	0.23	+0.0
2,149,656	-		PS417_09975	0.23	+0.2
2,149,656	-		PS417_09975	0.23	-1.6
2,149,743	+		PS417_09975	0.51	-1.3
2,149,849	-		PS417_09975	0.85	+0.6
2,149,849	-		PS417_09975	0.85	-0.2
2,149,852	+		PS417_09975	0.86	-1.3
2,149,935	+				-0.6
2,149,945	+				-1.6
2,149,958	-				+0.8
2,150,006	+		PS417_09980	0.16	+0.0
2,150,047	-		PS417_09980	0.34	+0.3
2,150,047	-		PS417_09980	0.34	+0.2
2,150,054	-		PS417_09980	0.37	+0.0
2,150,135	+		PS417_09980	0.72	-0.4
2,150,169	-		PS417_09980	0.87	+1.4
2,150,169	-		PS417_09980	0.87	-0.1
2,150,169	-		PS417_09980	0.87	+1.4