Strain Fitness in Pseudomonas simiae WCS417 around PS417_05655

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,269,716	+				+0.1
1,269,815	-		PS417_05645	0.24	-0.3
1,269,854	+		PS417_05645	0.30	+0.4
1,269,854	+		PS417_05645	0.30	-0.1
1,269,873	-		PS417_05645	0.33	-0.1
1,270,035	+		PS417_05645	0.59	-0.4
1,270,035	+		PS417_05645	0.59	-1.2
1,270,036	-		PS417_05645	0.59	-0.1
1,270,036	-		PS417_05645	0.59	+0.5
1,270,133	-		PS417_05645	0.74	+1.9
1,270,197	-		PS417_05645	0.84	-0.9
1,270,212	+		PS417_05645	0.87	+0.1
1,270,213	-		PS417_05645	0.87	-0.2
1,270,213	-		PS417_05645	0.87	+0.0
1,270,292	-				+1.0
1,270,294	-				-0.1
1,270,294	-				-0.4
1,270,308	+				-0.1
1,270,308	+				-0.6
1,270,309	-				-0.2
1,270,309	-				-0.3
1,270,309	-				+2.7
1,270,309	-				-0.2
1,270,309	-				+0.7
1,270,445	+		PS417_05650	0.36	+0.0
1,270,445	+		PS417_05650	0.36	-1.1
1,270,500	+		PS417_05650	0.66	+0.9
1,270,500	+		PS417_05650	0.66	-1.7
1,270,501	-				-0.1
1,270,501	-		PS417_05650	0.66	-0.3
1,270,562	+				-0.7
1,270,562	+				+1.2
1,270,562	+				-0.0
1,270,563	-				-1.3
1,270,580	-				-0.3
1,270,601	+				-0.5
1,270,602	-				-0.9
1,270,604	-				-0.7
1,270,604	-				-0.7
1,270,755	+		PS417_05655	0.13	+0.1
1,270,755	+		PS417_05655	0.13	-1.6
1,270,756	-				+1.5
1,270,889	-		PS417_05655	0.34	+0.2
1,270,889	-		PS417_05655	0.34	+0.1
1,271,065	-		PS417_05655	0.62	+0.6
1,271,086	-		PS417_05655	0.65	-2.4
1,271,115	+		PS417_05655	0.70	+0.1
1,271,115	+		PS417_05655	0.70	+1.8
1,271,115	+		PS417_05655	0.70	+0.4
1,271,115	+				+1.5
1,271,347	-				+0.5
1,271,347	-				-0.1
1,271,416	+				+1.1
1,271,416	+				-0.4
1,271,417	-				-0.5
1,271,417	-				+0.1
1,271,529	+				-1.1
1,271,676	+		PS417_05660	0.32	-0.5
1,271,676	+		PS417_05660	0.32	-0.8
1,271,677	-		PS417_05660	0.32	-0.2
1,271,677	-		PS417_05660	0.32	-1.1
1,271,742	+		PS417_05660	0.39	+0.9
1,271,759	-		PS417_05660	0.40	-0.8
1,271,835	+		PS417_05660	0.48	+0.0
1,271,835	+		PS417_05660	0.48	-0.7
1,271,836	-		PS417_05660	0.48	+1.9
1,271,836	-		PS417_05660	0.48	-0.1
1,271,836	-		PS417_05660	0.48	+2.9
1,271,926	+		PS417_05660	0.58	-0.3
1,271,927	-		PS417_05660	0.58	-0.0
1,272,105	-		PS417_05660	0.77	-0.1