Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00210 and PS417_00215 are separated by 217 nucleotides PS417_00215 and PS417_00220 are separated by 235 nucleotides PS417_00220 and PS417_00225 are separated by 0 nucleotides
PS417_00210: PS417_00210 - hypothetical protein, at 42,057 to 43,058
_00210
PS417_00215: PS417_00215 - peroxiredoxin OsmC, at 43,276 to 43,707
_00215
PS417_00220: PS417_00220 - hypothetical protein, at 43,943 to 44,182
_00220
PS417_00225: PS417_00225 - hypothetical protein, at 44,183 to 44,605
_00225
Position (kb) 43
44 Strain fitness (log2 ratio) -2
-1
0
1 at 42.347 kb on - strand, within PS417_00210 at 42.347 kb on - strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.535 kb on - strand, within PS417_00210 at 42.623 kb on - strand, within PS417_00210 at 42.623 kb on - strand, within PS417_00210 at 42.902 kb on + strand, within PS417_00210 at 42.902 kb on + strand, within PS417_00210 at 42.903 kb on - strand, within PS417_00210 at 42.903 kb on - strand, within PS417_00210 at 42.934 kb on + strand, within PS417_00210 at 43.039 kb on - strand at 43.059 kb on - strand at 43.059 kb on - strand at 43.143 kb on + strand at 43.144 kb on - strand at 43.146 kb on - strand at 43.276 kb on - strand at 43.281 kb on + strand at 43.281 kb on + strand at 43.338 kb on + strand, within PS417_00215 at 43.339 kb on - strand, within PS417_00215 at 43.339 kb on - strand, within PS417_00215 at 43.361 kb on + strand, within PS417_00215 at 43.362 kb on - strand, within PS417_00215 at 43.526 kb on + strand, within PS417_00215 at 43.526 kb on + strand, within PS417_00215 at 43.527 kb on - strand, within PS417_00215 at 43.665 kb on - strand at 43.700 kb on + strand at 43.700 kb on + strand at 43.701 kb on - strand at 43.716 kb on + strand at 43.717 kb on - strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.842 kb on - strand at 43.845 kb on + strand at 43.846 kb on - strand at 43.852 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.886 kb on - strand at 43.886 kb on - strand at 43.887 kb on + strand at 43.892 kb on + strand at 43.893 kb on - strand at 43.893 kb on - strand at 43.902 kb on - strand at 43.977 kb on + strand, within PS417_00220 at 44.070 kb on - strand, within PS417_00220 at 44.246 kb on - strand, within PS417_00225 at 44.283 kb on + strand, within PS417_00225 at 44.283 kb on + strand, within PS417_00225 at 44.284 kb on - strand, within PS417_00225 at 44.337 kb on + strand, within PS417_00225 at 44.338 kb on - strand, within PS417_00225 at 44.631 kb on - strand at 44.631 kb on - strand at 44.631 kb on - strand at 44.631 kb on - strand at 44.664 kb on - strand at 44.669 kb on + strand at 44.669 kb on + strand at 44.670 kb on - strand at 44.670 kb on - strand at 44.670 kb on - strand at 44.670 kb on - strand at 44.671 kb on + strand at 44.671 kb on + strand at 44.671 kb on + strand at 44.672 kb on - strand at 44.672 kb on - strand at 44.672 kb on - strand at 44.672 kb on - strand at 44.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 42,347 - PS417_00210 0.29 +0.2 42,347 - PS417_00210 0.29 -0.2 42,534 + PS417_00210 0.48 -0.4 42,534 + PS417_00210 0.48 -0.4 42,534 + PS417_00210 0.48 -2.0 42,535 - PS417_00210 0.48 +0.8 42,623 - PS417_00210 0.56 -1.2 42,623 - PS417_00210 0.56 +0.6 42,902 + PS417_00210 0.84 +0.5 42,902 + PS417_00210 0.84 +0.6 42,903 - PS417_00210 0.84 -1.1 42,903 - PS417_00210 0.84 -1.5 42,934 + PS417_00210 0.88 +0.1 43,039 - -0.8 43,059 - -0.1 43,059 - +0.1 43,143 + -0.1 43,144 - -0.4 43,146 - +0.1 43,276 - -2.6 43,281 + -2.5 43,281 + -0.4 43,338 + PS417_00215 0.14 -0.0 43,339 - PS417_00215 0.15 -0.3 43,339 - PS417_00215 0.15 -0.3 43,361 + PS417_00215 0.20 -1.3 43,362 - PS417_00215 0.20 -0.8 43,526 + PS417_00215 0.58 +0.1 43,526 + PS417_00215 0.58 -0.8 43,527 - PS417_00215 0.58 -0.7 43,665 - +0.5 43,700 + -1.1 43,700 + -0.6 43,701 - +0.6 43,716 + +1.1 43,717 - +0.4 43,841 + -0.2 43,841 + +1.3 43,841 + -0.2 43,841 + -1.5 43,841 + -1.1 43,842 - -1.5 43,845 + -0.9 43,846 - +0.7 43,852 + -0.2 43,885 + -0.0 43,885 + +0.5 43,885 + -0.5 43,885 + +0.2 43,886 - -0.8 43,886 - +0.2 43,887 + +0.1 43,892 + +0.2 43,893 - -0.7 43,893 - +1.7 43,902 - +0.6 43,977 + PS417_00220 0.14 +0.2 44,070 - PS417_00220 0.53 -2.0 44,246 - PS417_00225 0.15 +0.2 44,283 + PS417_00225 0.24 -0.5 44,283 + PS417_00225 0.24 +1.1 44,284 - PS417_00225 0.24 -0.1 44,337 + PS417_00225 0.36 -0.2 44,338 - PS417_00225 0.37 +0.7 44,631 - +0.1 44,631 - +0.9 44,631 - -1.0 44,631 - +0.5 44,664 - -0.9 44,669 + -0.5 44,669 + -0.1 44,670 - -1.5 44,670 - -0.3 44,670 - +1.1 44,670 - -0.8 44,671 + +1.5 44,671 + +0.1 44,671 + +0.5 44,672 - +0.5 44,672 - -0.0 44,672 - +0.4 44,672 - +0.8 44,672 - +1.0
Or see this region's nucleotide sequence