Strain Fitness in Pseudomonas simiae WCS417 around PS417_19185

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,155,118	+		PS417_19180	0.70	-0.0
4,155,118	+		PS417_19180	0.70	-0.3
4,155,119	-		PS417_19180	0.70	-0.8
4,155,263	-		PS417_19180	0.76	-1.1
4,155,280	+		PS417_19180	0.76	+0.5
4,155,295	-		PS417_19180	0.77	+0.2
4,155,487	+		PS417_19180	0.84	-2.2
4,155,487	+		PS417_19180	0.84	+1.4
4,155,488	-		PS417_19180	0.84	+1.2
4,155,568	+		PS417_19180	0.87	-0.6
4,155,568	+		PS417_19180	0.87	-0.0
4,155,569	-		PS417_19180	0.87	+0.4
4,155,569	-				+1.1
4,155,574	+		PS417_19180	0.87	-0.1
4,155,575	-		PS417_19180	0.87	+0.0
4,155,695	-				-0.1
4,155,809	+				-0.2
4,155,809	+				-0.2
4,155,847	+				-0.4
4,155,902	+				+0.3
4,155,902	+				-0.3
4,155,902	+				-1.2
4,155,903	-				-0.2
4,155,903	-				+0.7
4,155,931	+				-0.9
4,155,932	-				-0.7
4,155,944	-				-0.9
4,155,964	+				+0.5
4,155,965	-				+0.0
4,155,970	+				-0.7
4,155,971	-				+0.3
4,155,971	-				-0.6
4,155,971	-				+0.2
4,156,004	+				-0.5
4,156,004	+				-0.2
4,156,004	+				+0.3
4,156,004	+				-1.1
4,156,004	+				-0.8
4,156,015	+				-0.7
4,156,017	+				-0.2
4,156,018	-				-0.6
4,156,018	-				-0.9
4,156,061	-				-0.2
4,156,404	+		PS417_19185	0.12	+1.2
4,156,413	-		PS417_19185	0.12	-1.2
4,156,413	-		PS417_19185	0.12	-1.0
4,156,492	-		PS417_19185	0.15	+1.0
4,156,611	-		PS417_19185	0.19	-3.6
4,156,611	-		PS417_19185	0.19	-1.0
4,156,611	-		PS417_19185	0.19	-2.4
4,156,611	-		PS417_19185	0.19	-2.9
4,156,690	+		PS417_19185	0.21	+0.2
4,156,774	+		PS417_19185	0.24	-0.4
4,156,774	+		PS417_19185	0.24	-0.0
4,156,774	+		PS417_19185	0.24	-1.1
4,156,774	+		PS417_19185	0.24	-0.4
4,156,774	+		PS417_19185	0.24	+0.2
4,156,774	+		PS417_19185	0.24	-1.3
4,156,775	-		PS417_19185	0.24	-0.5
4,156,775	-		PS417_19185	0.24	+0.8
4,156,775	-		PS417_19185	0.24	-0.4
4,156,885	+		PS417_19185	0.28	-0.1
4,156,886	-		PS417_19185	0.28	+0.7
4,156,886	-		PS417_19185	0.28	+0.0
4,156,899	+		PS417_19185	0.28	-1.4
4,156,899	+		PS417_19185	0.28	-0.2
4,156,899	+		PS417_19185	0.28	+0.3
4,156,899	+		PS417_19185	0.28	-0.6
4,156,899	+		PS417_19185	0.28	-0.9
4,156,900	-		PS417_19185	0.28	-0.9
4,156,900	-		PS417_19185	0.28	+2.0
4,156,900	-		PS417_19185	0.28	-1.2
4,156,900	-		PS417_19185	0.28	-0.3
4,156,900	-		PS417_19185	0.28	-0.0
4,156,900	-		PS417_19185	0.28	-1.9
4,156,900	-		PS417_19185	0.28	+0.0
4,156,900	-		PS417_19185	0.28	-0.0
4,156,969	+		PS417_19185	0.31	+0.3
4,157,160	+		PS417_19185	0.37	-0.4
4,157,161	-		PS417_19185	0.37	+0.2
4,157,175	+		PS417_19185	0.38	-1.2
4,157,178	+		PS417_19185	0.38	-0.1
4,157,228	-		PS417_19185	0.39	-0.2
4,157,283	+		PS417_19185	0.41	+0.4
4,157,284	-		PS417_19185	0.41	+0.6
4,157,286	+		PS417_19185	0.41	-0.6
4,157,287	-				+0.3
4,157,287	-		PS417_19185	0.41	+0.0
4,157,287	-				-0.7
4,157,414	+		PS417_19185	0.45	-0.0
4,157,450	+		PS417_19185	0.47	-1.7
4,157,450	+		PS417_19185	0.47	-0.5
4,157,450	+		PS417_19185	0.47	+0.0
4,157,450	+		PS417_19185	0.47	-1.2
4,157,451	-		PS417_19185	0.47	-0.1
4,157,521	+		PS417_19185	0.49	-2.1
4,157,857	-		PS417_19185	0.60	-0.7
4,157,857	-		PS417_19185	0.60	+1.5
4,157,994	+		PS417_19185	0.65	-0.8
4,158,322	-		PS417_19185	0.76	-1.0
4,158,327	+		PS417_19185	0.76	+0.0
4,158,327	+		PS417_19185	0.76	-0.1
4,158,328	-		PS417_19185	0.76	-0.3
4,158,355	+		PS417_19185	0.77	-1.2
4,158,356	-		PS417_19185	0.77	+0.4
4,158,356	-		PS417_19185	0.77	+0.4
4,158,516	+		PS417_19185	0.82	-0.4
4,158,516	+		PS417_19185	0.82	+0.1
4,158,516	+		PS417_19185	0.82	-0.4
4,158,516	+		PS417_19185	0.82	-1.2
4,158,517	-		PS417_19185	0.82	+0.5
4,158,610	-		PS417_19185	0.85	-0.9
4,158,616	+		PS417_19185	0.86	-1.2
4,158,617	-		PS417_19185	0.86	+0.1
4,158,681	+		PS417_19185	0.88	-0.2
4,158,681	+		PS417_19185	0.88	+0.8
4,158,681	+		PS417_19185	0.88	-0.4
4,158,682	-		PS417_19185	0.88	-1.3
4,158,690	+		PS417_19185	0.88	-1.0
4,158,816	+				-0.6
4,158,967	-				+0.4
4,159,010	-				-1.1
4,159,039	+				-1.5
4,159,040	-				+0.6
4,159,112	-				+0.5
4,159,233	+		PS417_19190	0.23	-0.9
4,159,234	-		PS417_19190	0.23	-1.6
4,159,234	-		PS417_19190	0.23	+0.2
4,159,287	+		PS417_19190	0.41	-0.5
4,159,288	-		PS417_19190	0.41	-0.7
4,159,382	-		PS417_19190	0.73	-1.9
4,159,771	-		PS417_19195	0.57	-0.7
4,159,771	-		PS417_19195	0.57	-2.9
4,159,851	+		PS417_19195	0.73	+0.6
4,159,852	-		PS417_19195	0.73	+0.6
4,159,852	-		PS417_19195	0.73	+1.4
4,159,852	-		PS417_19195	0.73	-1.3
4,160,009	-				-0.6
4,160,020	+				-0.0
4,160,021	-				-0.5
4,160,021	-				-0.9