Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00770 and PS417_00775 are separated by 63 nucleotides PS417_00775 and PS417_00780 are separated by 15 nucleotides PS417_00780 and PS417_00785 are separated by 272 nucleotides PS417_00785 and PS417_00790 are separated by 40 nucleotides
PS417_00770: PS417_00770 - autotransporter, at 171,401 to 173,989
_00770
PS417_00775: PS417_00775 - hypothetical protein, at 174,053 to 174,640
_00775
PS417_00780: PS417_00780 - hypothetical protein, at 174,656 to 175,267
_00780
PS417_00785: PS417_00785 - hypothetical protein, at 175,540 to 176,121
_00785
PS417_00790: PS417_00790 - curli production assembly protein CsgG, at 176,162 to 176,842
_00790
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 173.672 kb on + strand, within PS417_00770 at 173.807 kb on + strand at 173.808 kb on - strand at 173.808 kb on - strand at 173.860 kb on + strand at 173.861 kb on - strand at 173.861 kb on - strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.888 kb on + strand at 173.889 kb on - strand at 173.889 kb on - strand at 173.922 kb on - strand at 173.922 kb on - strand at 173.988 kb on - strand at 173.997 kb on + strand at 173.997 kb on + strand at 174.005 kb on + strand at 174.005 kb on + strand at 174.005 kb on + strand at 174.006 kb on - strand at 174.088 kb on + strand at 174.088 kb on + strand at 174.313 kb on - strand, within PS417_00775 at 174.313 kb on - strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.493 kb on + strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.657 kb on + strand at 174.757 kb on - strand, within PS417_00780 at 174.757 kb on - strand, within PS417_00780 at 174.770 kb on - strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.961 kb on + strand, within PS417_00780 at 175.026 kb on + strand, within PS417_00780 at 175.200 kb on + strand, within PS417_00780 at 175.201 kb on - strand, within PS417_00780 at 175.201 kb on - strand, within PS417_00780 at 175.322 kb on - strand at 175.360 kb on - strand at 175.360 kb on - strand at 175.397 kb on + strand at 175.425 kb on + strand at 175.425 kb on + strand at 175.426 kb on - strand at 175.506 kb on + strand at 175.506 kb on + strand at 175.556 kb on + strand at 175.603 kb on + strand, within PS417_00785 at 175.603 kb on + strand, within PS417_00785 at 175.604 kb on - strand, within PS417_00785 at 175.606 kb on + strand, within PS417_00785 at 175.606 kb on + strand, within PS417_00785 at 175.606 kb on + strand, within PS417_00785 at 175.607 kb on - strand at 175.607 kb on - strand, within PS417_00785 at 175.607 kb on - strand, within PS417_00785 at 175.819 kb on + strand, within PS417_00785 at 175.819 kb on + strand, within PS417_00785 at 175.820 kb on - strand, within PS417_00785 at 175.820 kb on - strand, within PS417_00785 at 175.820 kb on - strand, within PS417_00785 at 175.820 kb on - strand, within PS417_00785 at 175.832 kb on + strand, within PS417_00785 at 175.906 kb on + strand, within PS417_00785 at 175.907 kb on - strand, within PS417_00785 at 175.907 kb on - strand, within PS417_00785 at 176.062 kb on + strand, within PS417_00785 at 176.062 kb on + strand, within PS417_00785 at 176.062 kb on + strand, within PS417_00785 at 176.063 kb on - strand at 176.063 kb on - strand at 176.150 kb on + strand at 176.151 kb on - strand at 176.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 173,672 + PS417_00770 0.88 -0.3 173,807 + -0.4 173,808 - +0.1 173,808 - -0.1 173,860 + -0.2 173,861 - -0.1 173,861 - +0.6 173,864 + -0.6 173,864 + -0.7 173,864 + -0.4 173,864 + -1.8 173,864 + -0.7 173,864 + -1.7 173,864 + -0.2 173,864 + -0.7 173,864 + -1.2 173,865 - +0.1 173,865 - -3.7 173,865 - +0.4 173,865 - -0.4 173,888 + -0.7 173,889 - -0.8 173,889 - -0.7 173,922 - +0.2 173,922 - +0.5 173,988 - -0.5 173,997 + +0.2 173,997 + +0.3 174,005 + +0.9 174,005 + +0.2 174,005 + -1.6 174,006 - +1.7 174,088 + -0.8 174,088 + +0.1 174,313 - PS417_00775 0.44 +3.1 174,313 - PS417_00775 0.44 +0.6 174,345 + PS417_00775 0.50 +1.3 174,345 + +1.5 174,345 + PS417_00775 0.50 -0.5 174,345 + PS417_00775 0.50 -1.3 174,345 + PS417_00775 0.50 +0.1 174,345 + PS417_00775 0.50 +0.5 174,346 - PS417_00775 0.50 -1.0 174,346 - PS417_00775 0.50 -0.5 174,346 - PS417_00775 0.50 -0.6 174,493 + PS417_00775 0.75 +0.2 174,494 - PS417_00775 0.75 -0.0 174,494 - PS417_00775 0.75 +0.0 174,494 - PS417_00775 0.75 -0.0 174,501 + PS417_00775 0.76 -1.2 174,501 + PS417_00775 0.76 -1.3 174,501 + PS417_00775 0.76 -0.9 174,501 + PS417_00775 0.76 +0.0 174,502 - PS417_00775 0.76 -0.2 174,502 - PS417_00775 0.76 -0.3 174,502 - PS417_00775 0.76 -0.5 174,657 + -0.7 174,757 - PS417_00780 0.17 +0.1 174,757 - PS417_00780 0.17 -0.2 174,770 - PS417_00780 0.19 +0.0 174,864 + PS417_00780 0.34 +0.0 174,864 + PS417_00780 0.34 -2.2 174,864 + PS417_00780 0.34 +1.1 174,865 - PS417_00780 0.34 +1.8 174,865 - PS417_00780 0.34 -1.0 174,865 - PS417_00780 0.34 +0.8 174,961 + PS417_00780 0.50 +0.2 175,026 + PS417_00780 0.60 +0.7 175,200 + PS417_00780 0.89 +0.8 175,201 - PS417_00780 0.89 +0.5 175,201 - PS417_00780 0.89 +2.2 175,322 - -0.9 175,360 - +0.6 175,360 - -0.0 175,397 + +0.5 175,425 + -1.0 175,425 + +0.4 175,426 - -0.1 175,506 + +0.3 175,506 + -0.4 175,556 + -0.8 175,603 + PS417_00785 0.11 -0.5 175,603 + PS417_00785 0.11 -0.6 175,604 - PS417_00785 0.11 +0.0 175,606 + PS417_00785 0.11 -1.9 175,606 + PS417_00785 0.11 +0.1 175,606 + PS417_00785 0.11 -0.6 175,607 - -1.5 175,607 - PS417_00785 0.12 -0.9 175,607 - PS417_00785 0.12 +0.4 175,819 + PS417_00785 0.48 -0.3 175,819 + PS417_00785 0.48 +0.4 175,820 - PS417_00785 0.48 +0.1 175,820 - PS417_00785 0.48 +0.1 175,820 - PS417_00785 0.48 -0.2 175,820 - PS417_00785 0.48 +0.1 175,832 + PS417_00785 0.50 -0.0 175,906 + PS417_00785 0.63 +0.0 175,907 - PS417_00785 0.63 +1.7 175,907 - PS417_00785 0.63 +2.7 176,062 + PS417_00785 0.90 -0.5 176,062 + PS417_00785 0.90 -0.0 176,062 + PS417_00785 0.90 -0.5 176,063 - -1.0 176,063 - +0.6 176,150 + -0.2 176,151 - +0.1 176,151 - -0.2
Or see this region's nucleotide sequence