Strain Fitness in Pseudomonas simiae WCS417 around PS417_04005

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03995 and PS417_04000 are separated by 2 nucleotidesPS417_04000 and PS417_04005 are separated by 49 nucleotidesPS417_04005 and PS417_04010 are separated by 479 nucleotides PS417_03995: PS417_03995 - Fe(II)-dependent oxygenase, at 897,866 to 898,546 _03995 PS417_04000: PS417_04000 - hypothetical protein, at 898,549 to 899,301 _04000 PS417_04005: PS417_04005 - ornithine decarboxylase, at 899,351 to 900,514 _04005 PS417_04010: PS417_04010 - glycine/betaine ABC transporter ATP-binding protein, at 900,994 to 902,151 _04010 Position (kb) 899 900 901Strain fitness (log2 ratio) -2 -1 0 1at 898.374 kb on - strand, within PS417_03995at 898.511 kb on + strandat 898.512 kb on - strandat 898.512 kb on - strandat 898.559 kb on + strandat 898.560 kb on - strandat 898.788 kb on + strand, within PS417_04000at 898.855 kb on + strand, within PS417_04000at 898.894 kb on + strand, within PS417_04000at 898.894 kb on + strand, within PS417_04000at 898.895 kb on - strand, within PS417_04000at 898.895 kb on - strand, within PS417_04000at 898.895 kb on - strand, within PS417_04000at 898.895 kb on - strand, within PS417_04000at 898.895 kb on - strand, within PS417_04000at 898.900 kb on + strand, within PS417_04000at 898.900 kb on + strand, within PS417_04000at 898.900 kb on + strand, within PS417_04000at 898.901 kb on - strand, within PS417_04000at 898.963 kb on + strand, within PS417_04000at 899.117 kb on - strand, within PS417_04000at 899.270 kb on - strandat 899.270 kb on - strandat 899.300 kb on - strandat 899.320 kb on + strandat 899.321 kb on - strandat 899.358 kb on + strandat 899.359 kb on - strandat 899.359 kb on - strandat 899.404 kb on - strandat 899.415 kb on + strandat 899.436 kb on + strandat 899.482 kb on - strand, within PS417_04005at 899.490 kb on + strand, within PS417_04005at 899.491 kb on - strand, within PS417_04005at 899.628 kb on + strand, within PS417_04005at 899.628 kb on + strand, within PS417_04005at 899.628 kb on + strandat 899.659 kb on + strand, within PS417_04005at 899.820 kb on + strand, within PS417_04005at 899.820 kb on + strand, within PS417_04005at 899.820 kb on + strand, within PS417_04005at 899.821 kb on - strand, within PS417_04005at 899.821 kb on - strand, within PS417_04005at 899.821 kb on - strand, within PS417_04005at 899.821 kb on - strand, within PS417_04005at 899.821 kb on - strand, within PS417_04005at 900.096 kb on + strand, within PS417_04005at 900.096 kb on + strand, within PS417_04005at 900.096 kb on + strand, within PS417_04005at 900.096 kb on + strand, within PS417_04005at 900.096 kb on + strand, within PS417_04005at 900.096 kb on + strand, within PS417_04005at 900.097 kb on - strand, within PS417_04005at 900.097 kb on - strand, within PS417_04005at 900.097 kb on - strand, within PS417_04005at 900.097 kb on - strand, within PS417_04005at 900.097 kb on - strand, within PS417_04005at 900.187 kb on - strand, within PS417_04005at 900.187 kb on - strand, within PS417_04005at 900.187 kb on - strand, within PS417_04005at 900.229 kb on + strand, within PS417_04005at 900.230 kb on - strand, within PS417_04005at 900.273 kb on + strand, within PS417_04005at 900.274 kb on - strand, within PS417_04005at 900.354 kb on + strand, within PS417_04005at 900.355 kb on - strand, within PS417_04005at 900.396 kb on + strand, within PS417_04005at 900.397 kb on - strand, within PS417_04005at 900.492 kb on + strandat 900.527 kb on + strandat 900.540 kb on + strandat 900.543 kb on + strandat 900.593 kb on + strandat 900.722 kb on - strandat 900.739 kb on - strandat 900.795 kb on + strandat 900.795 kb on + strandat 900.795 kb on + strandat 900.796 kb on - strandat 900.796 kb on - strandat 900.799 kb on + strandat 900.800 kb on - strandat 900.800 kb on - strandat 900.800 kb on - strandat 900.815 kb on - strandat 900.815 kb on - strandat 900.924 kb on + strandat 900.925 kb on - strandat 900.925 kb on - strandat 900.925 kb on - strandat 900.992 kb on + strandat 900.993 kb on - strandat 901.027 kb on - strandat 901.148 kb on + strand, within PS417_04010at 901.148 kb on + strand, within PS417_04010at 901.148 kb on + strand, within PS417_04010at 901.149 kb on - strand, within PS417_04010at 901.262 kb on + strand, within PS417_04010at 901.262 kb on + strand, within PS417_04010at 901.262 kb on + strand, within PS417_04010at 901.263 kb on - strand, within PS417_04010at 901.301 kb on + strand, within PS417_04010at 901.302 kb on - strand, within PS417_04010at 901.420 kb on - strand, within PS417_04010at 901.441 kb on - strand, within PS417_04010

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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898,374 - PS417_03995 0.75 +1.3
898,511 + +0.4
898,512 - +0.8
898,512 - -0.1
898,559 + -0.4
898,560 - -1.5
898,788 + PS417_04000 0.32 -1.8
898,855 + PS417_04000 0.41 -1.4
898,894 + PS417_04000 0.46 -0.1
898,894 + PS417_04000 0.46 -1.0
898,895 - PS417_04000 0.46 +1.0
898,895 - PS417_04000 0.46 +0.3
898,895 - PS417_04000 0.46 +0.0
898,895 - PS417_04000 0.46 -0.3
898,895 - PS417_04000 0.46 +0.4
898,900 + PS417_04000 0.47 -0.7
898,900 + PS417_04000 0.47 -0.9
898,900 + PS417_04000 0.47 -1.5
898,901 - PS417_04000 0.47 +1.1
898,963 + PS417_04000 0.55 -1.3
899,117 - PS417_04000 0.75 +0.6
899,270 - +0.6
899,270 - +0.0
899,300 - +0.4
899,320 + -0.6
899,321 - +0.3
899,358 + -0.6
899,359 - -0.8
899,359 - -1.8
899,404 - -0.9
899,415 + -1.6
899,436 + -0.3
899,482 - PS417_04005 0.11 -0.4
899,490 + PS417_04005 0.12 -1.8
899,491 - PS417_04005 0.12 +0.4
899,628 + PS417_04005 0.24 +1.6
899,628 + PS417_04005 0.24 +0.9
899,628 + +0.6
899,659 + PS417_04005 0.26 -1.0
899,820 + PS417_04005 0.40 -0.9
899,820 + PS417_04005 0.40 -1.5
899,820 + PS417_04005 0.40 +0.2
899,821 - PS417_04005 0.40 -1.1
899,821 - PS417_04005 0.40 -0.3
899,821 - PS417_04005 0.40 -2.3
899,821 - PS417_04005 0.40 -1.4
899,821 - PS417_04005 0.40 -0.7
900,096 + PS417_04005 0.64 +1.6
900,096 + PS417_04005 0.64 -0.5
900,096 + PS417_04005 0.64 -1.0
900,096 + PS417_04005 0.64 +0.7
900,096 + PS417_04005 0.64 -0.5
900,096 + PS417_04005 0.64 -0.4
900,097 - PS417_04005 0.64 -1.7
900,097 - PS417_04005 0.64 -1.2
900,097 - PS417_04005 0.64 -1.0
900,097 - PS417_04005 0.64 +0.2
900,097 - PS417_04005 0.64 +0.3
900,187 - PS417_04005 0.72 -0.8
900,187 - PS417_04005 0.72 +0.6
900,187 - PS417_04005 0.72 -0.5
900,229 + PS417_04005 0.75 -0.9
900,230 - PS417_04005 0.76 -0.3
900,273 + PS417_04005 0.79 -0.6
900,274 - PS417_04005 0.79 -1.1
900,354 + PS417_04005 0.86 -1.9
900,355 - PS417_04005 0.86 -0.0
900,396 + PS417_04005 0.90 -0.8
900,397 - PS417_04005 0.90 -1.2
900,492 + -0.3
900,527 + -1.0
900,540 + -2.4
900,543 + +1.6
900,593 + -0.8
900,722 - +0.6
900,739 - -0.3
900,795 + +0.2
900,795 + +0.4
900,795 + -0.7
900,796 - -0.7
900,796 - -0.0
900,799 + -2.4
900,800 - -0.5
900,800 - +1.1
900,800 - +0.4
900,815 - +0.4
900,815 - +1.3
900,924 + -0.9
900,925 - +0.6
900,925 - +0.6
900,925 - +0.8
900,992 + -1.4
900,993 - -0.2
901,027 - -1.4
901,148 + PS417_04010 0.13 -0.3
901,148 + PS417_04010 0.13 -0.1
901,148 + PS417_04010 0.13 -0.6
901,149 - PS417_04010 0.13 -0.5
901,262 + PS417_04010 0.23 +1.1
901,262 + PS417_04010 0.23 +0.8
901,262 + PS417_04010 0.23 -0.1
901,263 - PS417_04010 0.23 -1.2
901,301 + PS417_04010 0.27 +0.1
901,302 - PS417_04010 0.27 -1.1
901,420 - PS417_04010 0.37 -1.6
901,441 - PS417_04010 0.39 -1.6

Or see this region's nucleotide sequence