Strain Fitness in Pseudomonas simiae WCS417 around PS417_03650

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03640 and PS417_03645 overlap by 14 nucleotidesPS417_03645 and PS417_03650 overlap by 4 nucleotidesPS417_03650 and PS417_03655 overlap by 4 nucleotidesPS417_03655 and PS417_03660 overlap by 4 nucleotides PS417_03640: PS417_03640 - cyclopropane-fatty-acyl-phospholipid synthase, at 825,073 to 826,344 _03640 PS417_03645: PS417_03645 - hypothetical protein, at 826,331 to 827,140 _03645 PS417_03650: PS417_03650 - FAD-dependent oxidoreductase, at 827,137 to 828,384 _03650 PS417_03655: PS417_03655 - short-chain dehydrogenase, at 828,381 to 829,163 _03655 PS417_03660: PS417_03660 - transcriptional regulator, at 829,160 to 829,582 _03660 Position (kb) 827 828 829Strain fitness (log2 ratio) -2 -1 0 1 2at 826.198 kb on + strand, within PS417_03640at 826.243 kb on + strandat 826.243 kb on + strandat 826.244 kb on - strandat 826.244 kb on - strandat 826.244 kb on - strandat 826.244 kb on - strandat 826.449 kb on + strand, within PS417_03645at 826.449 kb on + strand, within PS417_03645at 826.449 kb on + strand, within PS417_03645at 826.450 kb on - strand, within PS417_03645at 826.450 kb on - strandat 826.497 kb on + strand, within PS417_03645at 826.498 kb on - strand, within PS417_03645at 826.629 kb on + strand, within PS417_03645at 826.729 kb on - strand, within PS417_03645at 826.729 kb on - strand, within PS417_03645at 826.806 kb on + strand, within PS417_03645at 826.807 kb on - strand, within PS417_03645at 826.826 kb on - strand, within PS417_03645at 826.882 kb on + strand, within PS417_03645at 826.883 kb on - strand, within PS417_03645at 826.883 kb on - strand, within PS417_03645at 826.959 kb on + strand, within PS417_03645at 827.225 kb on + strandat 827.226 kb on - strandat 827.248 kb on + strandat 827.291 kb on + strand, within PS417_03650at 827.291 kb on + strand, within PS417_03650at 827.292 kb on - strand, within PS417_03650at 827.292 kb on - strand, within PS417_03650at 827.306 kb on + strand, within PS417_03650at 827.306 kb on + strand, within PS417_03650at 827.306 kb on + strand, within PS417_03650at 827.307 kb on - strand, within PS417_03650at 827.307 kb on - strand, within PS417_03650at 827.411 kb on + strand, within PS417_03650at 827.412 kb on - strand, within PS417_03650at 827.412 kb on - strand, within PS417_03650at 827.412 kb on - strand, within PS417_03650at 827.412 kb on - strand, within PS417_03650at 827.412 kb on - strand, within PS417_03650at 827.744 kb on + strand, within PS417_03650at 827.744 kb on + strand, within PS417_03650at 827.745 kb on - strand, within PS417_03650at 827.745 kb on - strand, within PS417_03650at 827.745 kb on - strand, within PS417_03650at 827.745 kb on - strand, within PS417_03650at 827.745 kb on - strand, within PS417_03650at 827.900 kb on + strand, within PS417_03650at 827.901 kb on - strand, within PS417_03650at 827.901 kb on - strand, within PS417_03650at 828.173 kb on - strand, within PS417_03650at 828.194 kb on + strand, within PS417_03650at 828.216 kb on + strand, within PS417_03650at 828.236 kb on + strand, within PS417_03650at 828.243 kb on + strand, within PS417_03650at 828.273 kb on + strandat 828.273 kb on + strandat 828.336 kb on - strandat 828.384 kb on + strandat 828.384 kb on + strandat 828.384 kb on + strandat 828.385 kb on - strandat 828.385 kb on - strandat 828.385 kb on - strandat 828.683 kb on - strand, within PS417_03655at 828.709 kb on + strand, within PS417_03655at 828.709 kb on + strand, within PS417_03655at 828.709 kb on + strand, within PS417_03655at 828.815 kb on - strand, within PS417_03655at 829.016 kb on - strand, within PS417_03655at 829.218 kb on + strand, within PS417_03660at 829.218 kb on + strand, within PS417_03660at 829.219 kb on - strand, within PS417_03660at 829.242 kb on + strand, within PS417_03660at 829.243 kb on - strand, within PS417_03660at 829.258 kb on - strand, within PS417_03660

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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826,198 + PS417_03640 0.88 +0.5
826,243 + +0.8
826,243 + +0.0
826,244 - +1.4
826,244 - -0.7
826,244 - +0.7
826,244 - -0.3
826,449 + PS417_03645 0.15 +1.0
826,449 + PS417_03645 0.15 -0.4
826,449 + PS417_03645 0.15 -0.1
826,450 - PS417_03645 0.15 +0.5
826,450 - -1.2
826,497 + PS417_03645 0.20 +0.6
826,498 - PS417_03645 0.21 +0.3
826,629 + PS417_03645 0.37 -0.3
826,729 - PS417_03645 0.49 -0.2
826,729 - PS417_03645 0.49 +1.3
826,806 + PS417_03645 0.59 +0.3
826,807 - PS417_03645 0.59 -0.1
826,826 - PS417_03645 0.61 -0.4
826,882 + PS417_03645 0.68 +0.0
826,883 - PS417_03645 0.68 -0.1
826,883 - PS417_03645 0.68 -0.3
826,959 + PS417_03645 0.78 -0.7
827,225 + +0.7
827,226 - +1.3
827,248 + -0.4
827,291 + PS417_03650 0.12 +0.9
827,291 + PS417_03650 0.12 +0.5
827,292 - PS417_03650 0.12 +0.3
827,292 - PS417_03650 0.12 +0.0
827,306 + PS417_03650 0.14 +2.2
827,306 + PS417_03650 0.14 +0.5
827,306 + PS417_03650 0.14 +0.5
827,307 - PS417_03650 0.14 +0.5
827,307 - PS417_03650 0.14 -0.2
827,411 + PS417_03650 0.22 -0.3
827,412 - PS417_03650 0.22 +0.8
827,412 - PS417_03650 0.22 +1.1
827,412 - PS417_03650 0.22 +0.7
827,412 - PS417_03650 0.22 -0.4
827,412 - PS417_03650 0.22 -0.3
827,744 + PS417_03650 0.49 +0.8
827,744 + PS417_03650 0.49 -0.7
827,745 - PS417_03650 0.49 -0.8
827,745 - PS417_03650 0.49 +0.1
827,745 - PS417_03650 0.49 +0.7
827,745 - PS417_03650 0.49 -0.6
827,745 - PS417_03650 0.49 -0.6
827,900 + PS417_03650 0.61 +0.4
827,901 - PS417_03650 0.61 +0.1
827,901 - PS417_03650 0.61 -2.5
828,173 - PS417_03650 0.83 -0.3
828,194 + PS417_03650 0.85 +0.6
828,216 + PS417_03650 0.86 +0.1
828,236 + PS417_03650 0.88 -0.2
828,243 + PS417_03650 0.89 -1.0
828,273 + +0.2
828,273 + -0.4
828,336 - -0.2
828,384 + +2.6
828,384 + -0.0
828,384 + -0.3
828,385 - -1.3
828,385 - +0.3
828,385 - -0.1
828,683 - PS417_03655 0.39 -1.6
828,709 + PS417_03655 0.42 +0.9
828,709 + PS417_03655 0.42 -0.2
828,709 + PS417_03655 0.42 +0.8
828,815 - PS417_03655 0.55 -0.0
829,016 - PS417_03655 0.81 +0.0
829,218 + PS417_03660 0.14 +0.2
829,218 + PS417_03660 0.14 -0.2
829,219 - PS417_03660 0.14 -0.9
829,242 + PS417_03660 0.19 +0.9
829,243 - PS417_03660 0.20 +0.4
829,258 - PS417_03660 0.23 -1.5

Or see this region's nucleotide sequence