Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02095 and PS417_02100 overlap by 4 nucleotides PS417_02100 and PS417_02105 overlap by 4 nucleotides PS417_02105 and PS417_02110 are separated by 9 nucleotides PS417_02110 and PS417_02115 overlap by 23 nucleotides
PS417_02095: PS417_02095 - AMP-binding protein, at 469,059 to 470,729
_02095
PS417_02100: PS417_02100 - membrane protein, at 470,726 to 471,271
_02100
PS417_02105: PS417_02105 - acyl carrier protein, at 471,268 to 471,522
_02105
PS417_02110: PS417_02110 - acyl carrier protein, at 471,532 to 471,801
_02110
PS417_02115: PS417_02115 - acyltransferase, at 471,779 to 472,591
_02115
Position (kb) 470
471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 469.825 kb on + strand, within PS417_02095 at 469.826 kb on - strand, within PS417_02095 at 470.171 kb on + strand, within PS417_02095 at 470.172 kb on - strand, within PS417_02095 at 470.172 kb on - strand, within PS417_02095 at 470.219 kb on + strand, within PS417_02095 at 470.219 kb on + strand, within PS417_02095 at 470.220 kb on - strand, within PS417_02095 at 470.575 kb on + strand at 470.811 kb on + strand, within PS417_02100 at 470.811 kb on + strand, within PS417_02100 at 470.913 kb on + strand, within PS417_02100 at 470.913 kb on + strand, within PS417_02100 at 470.914 kb on - strand, within PS417_02100 at 470.983 kb on - strand, within PS417_02100 at 471.210 kb on + strand, within PS417_02100 at 471.210 kb on + strand, within PS417_02100 at 471.211 kb on - strand, within PS417_02100 at 471.211 kb on - strand, within PS417_02100 at 471.294 kb on - strand, within PS417_02105 at 471.375 kb on + strand, within PS417_02105 at 471.375 kb on + strand, within PS417_02105 at 471.504 kb on + strand at 471.769 kb on + strand, within PS417_02110 at 471.825 kb on + strand at 471.899 kb on + strand, within PS417_02115 at 471.899 kb on + strand, within PS417_02115 at 471.899 kb on + strand, within PS417_02115 at 471.900 kb on - strand, within PS417_02115 at 471.900 kb on - strand, within PS417_02115 at 471.901 kb on + strand, within PS417_02115 at 472.172 kb on - strand, within PS417_02115 at 472.174 kb on - strand, within PS417_02115
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 469,825 + PS417_02095 0.46 +1.3 469,826 - PS417_02095 0.46 +0.1 470,171 + PS417_02095 0.67 +0.3 470,172 - PS417_02095 0.67 -1.5 470,172 - PS417_02095 0.67 +1.1 470,219 + PS417_02095 0.69 +2.8 470,219 + PS417_02095 0.69 +0.3 470,220 - PS417_02095 0.69 +0.4 470,575 + -0.0 470,811 + PS417_02100 0.16 +0.9 470,811 + PS417_02100 0.16 +0.3 470,913 + PS417_02100 0.34 +0.5 470,913 + PS417_02100 0.34 +0.2 470,914 - PS417_02100 0.34 +1.3 470,983 - PS417_02100 0.47 +0.8 471,210 + PS417_02100 0.89 +0.4 471,210 + PS417_02100 0.89 -0.1 471,211 - PS417_02100 0.89 +1.6 471,211 - PS417_02100 0.89 +1.1 471,294 - PS417_02105 0.10 -0.5 471,375 + PS417_02105 0.42 -0.3 471,375 + PS417_02105 0.42 +0.4 471,504 + +0.3 471,769 + PS417_02110 0.88 -0.5 471,825 + -0.3 471,899 + PS417_02115 0.15 +0.6 471,899 + PS417_02115 0.15 -0.7 471,899 + PS417_02115 0.15 -0.1 471,900 - PS417_02115 0.15 -1.1 471,900 - PS417_02115 0.15 +0.5 471,901 + PS417_02115 0.15 -2.8 472,172 - PS417_02115 0.48 -0.3 472,174 - PS417_02115 0.49 +0.4
Or see this region's nucleotide sequence