Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18865 and PS417_18870 are separated by 59 nucleotides PS417_18870 and PS417_18875 are separated by 16 nucleotides PS417_18875 and PS417_18880 are separated by 39 nucleotides PS417_18880 and PS417_18885 overlap by 4 nucleotides
PS417_18865: PS417_18865 - hypothetical protein, at 4,086,997 to 4,087,647
_18865
PS417_18870: PS417_18870 - hypothetical protein, at 4,087,707 to 4,088,282
_18870
PS417_18875: PS417_18875 - hypothetical protein, at 4,088,299 to 4,088,589
_18875
PS417_18880: PS417_18880 - SAM-dependent methyltransferase, at 4,088,629 to 4,089,324
_18880
PS417_18885: PS417_18885 - GntR family transcriptional regulator, at 4,089,321 to 4,090,040
_18885
Position (kb) 4088
4089
4090 Strain fitness (log2 ratio) -2
-1
0
1 at 4087.645 kb on + strand at 4087.646 kb on - strand at 4087.646 kb on - strand at 4087.799 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.819 kb on - strand, within PS417_18870 at 4087.819 kb on - strand, within PS417_18870 at 4087.819 kb on - strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.982 kb on - strand, within PS417_18870 at 4087.982 kb on - strand, within PS417_18870 at 4087.982 kb on - strand, within PS417_18870 at 4088.291 kb on - strand at 4088.300 kb on + strand at 4088.602 kb on - strand at 4088.825 kb on + strand, within PS417_18880 at 4088.825 kb on + strand, within PS417_18880 at 4088.826 kb on - strand, within PS417_18880 at 4088.826 kb on - strand, within PS417_18880 at 4088.826 kb on - strand, within PS417_18880 at 4088.867 kb on + strand, within PS417_18880 at 4088.907 kb on + strand, within PS417_18880 at 4088.907 kb on + strand at 4088.907 kb on + strand, within PS417_18880 at 4088.907 kb on + strand, within PS417_18880 at 4088.908 kb on - strand, within PS417_18880 at 4088.908 kb on - strand, within PS417_18880 at 4089.141 kb on + strand, within PS417_18880 at 4089.555 kb on - strand, within PS417_18885 at 4089.555 kb on - strand, within PS417_18885 at 4089.638 kb on - strand, within PS417_18885 at 4090.010 kb on + strand at 4090.232 kb on + strand at 4090.232 kb on + strand at 4090.232 kb on + strand at 4090.232 kb on + strand at 4090.232 kb on + strand at 4090.233 kb on - strand at 4090.233 kb on - strand at 4090.233 kb on - strand at 4090.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 4,087,645 + -1.4 4,087,646 - -0.2 4,087,646 - +0.2 4,087,799 + PS417_18870 0.16 +0.5 4,087,818 + PS417_18870 0.19 -0.9 4,087,818 + PS417_18870 0.19 +0.2 4,087,818 + PS417_18870 0.19 +0.6 4,087,818 + PS417_18870 0.19 -0.2 4,087,819 - PS417_18870 0.19 -0.1 4,087,819 - PS417_18870 0.19 -0.2 4,087,819 - PS417_18870 0.19 +0.2 4,087,916 + PS417_18870 0.36 +0.4 4,087,916 + PS417_18870 0.36 -0.2 4,087,916 + PS417_18870 0.36 -0.1 4,087,916 + PS417_18870 0.36 +1.2 4,087,916 + PS417_18870 0.36 +0.4 4,087,917 - PS417_18870 0.36 +1.2 4,087,917 - PS417_18870 0.36 -0.1 4,087,917 - PS417_18870 0.36 -0.0 4,087,917 - PS417_18870 0.36 +1.2 4,087,917 - PS417_18870 0.36 +0.1 4,087,917 - PS417_18870 0.36 -1.8 4,087,917 - +1.1 4,087,917 - PS417_18870 0.36 -0.4 4,087,917 - PS417_18870 0.36 -0.0 4,087,982 - PS417_18870 0.48 -0.5 4,087,982 - PS417_18870 0.48 +0.1 4,087,982 - PS417_18870 0.48 -1.4 4,088,291 - -1.6 4,088,300 + -1.1 4,088,602 - -0.1 4,088,825 + PS417_18880 0.28 -0.9 4,088,825 + PS417_18880 0.28 -0.0 4,088,826 - PS417_18880 0.28 +0.4 4,088,826 - PS417_18880 0.28 +0.1 4,088,826 - PS417_18880 0.28 -0.3 4,088,867 + PS417_18880 0.34 -0.3 4,088,907 + PS417_18880 0.40 -0.9 4,088,907 + -0.1 4,088,907 + PS417_18880 0.40 -0.7 4,088,907 + PS417_18880 0.40 -0.6 4,088,908 - PS417_18880 0.40 -0.6 4,088,908 - PS417_18880 0.40 -0.7 4,089,141 + PS417_18880 0.74 -0.6 4,089,555 - PS417_18885 0.33 -0.2 4,089,555 - PS417_18885 0.33 -0.1 4,089,638 - PS417_18885 0.44 -1.5 4,090,010 + -0.9 4,090,232 + -0.0 4,090,232 + -0.8 4,090,232 + +0.2 4,090,232 + +0.2 4,090,232 + +1.6 4,090,233 - -0.3 4,090,233 - -0.1 4,090,233 - +0.9 4,090,269 - +0.0
Or see this region's nucleotide sequence